Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy9g0898 | ATGTCTATGAGTCAACATAGGGGTAGCATGAATCAAATTGTTGATCGTGTTGCAGATATCAATCCAACAAAGTTAGGTTGGAATTTAGTGGTTGGTGTTGTCCGTTTATACGAGTTATGCAGCCAATCCAATCCTGCTGATGTTTATAGCTTAGAGATGGTGCTGCAAGATGAACAGGGTGATCGGATACATTGTTCAATCCCAAAAGCAAATATTGTGGTATTCAAGACCTTGATACGTGAGAATGGAATATACTCGATGAGAAATTTCATTGTTAAAGGAAATAACAATTTTGTGAAGACAACAGGGCACAAATATAAATTGAATTTTTACCTGAAGACATGTGTTTCACGTCTTCCCAGTGATACGTTTCATTTAAATCCTTTTAGTTACGTTCCACTCCCTGAAATTGAGGCAATGGTTGGAATGAATCGCATTCACCTGTTAGATTTCATCGGTCAGGTGGTGGGTAAGGAAAATGCTCAAGATATGGTTACGAAATCCGGCCAGCAGAGTAAATGCATTGCACTTTACCTGGAGGATTTAGAGCAGAATAGGATGAAGTGCACCCTCTATGGTGAATCTGTAGAAAAAGTAATTAGTTTCATGGATAAACCTGAAAACGAGCCAGTCATCTTGGTGGCACAGTTGTTTAAGCCACATTTCTACTTGAATGAAGTCAGTGTTCAAAACAGTCTTTATGCTTCTCGGGTTTTTTTCAATCCAGATATTCCTGATGTTATATCGTTTAAGAATAGCTTAATGAAACAGGGTGAGAGAGCGTCACAGCCTATTAGTCACATTGATAGGCAACCTCAATACTCTGTTAGTCATGAGCTTTCAGCCGGGGCATTTCCAGTAAAGACAATTGAGGAGATTCTTAACATGACAACTGAAACATTGTGCTGGGTTGTTGGAACAATTGTCTCCATTGAGGTTGGTGCTACAGATTGGTTTTATGCTTCGTGTAAGACTTGCCCGAGAAAAGTTAAGGAGAACAAAGATCGATATTTTTGCGAGTACTGTGGAAAAGTGGGGTTTAATCCTCCGCTGAGGTATCGGCTTAACGTTGTCATCACTGATGGAACTGGATGTGTTAATGTTATAATATGGAATCAAGAAGCCAAATTGATTATGGGAAAGCCTGCAAGTGACATGAGAGACCTGAGTAAATCTGAAAGCACTAATTCCTACCCAAAAGCTTTTGACTCACTGCTTGAGATGAAGTTCCTTTTTAAAATATCCGTTGGAAAGAAAAATATTAGTACTCTTGACCAGGGTGCGGATCCAAGTGTTTCAAATTTGTTGGCTATAAGTGGACAAACTGATAATGAGTCGGACGGAATTGGTGTAGCAGTTGTTTCTTTATCAAAGGACTCTGTAATGGAAAGCAATTCTGATATAGGGTTGGAAACTCCTGCCAAATCTACGGGTGTTGAATTTGTTTCAAATTCTACAATAATGGTTGGGATGGATAGTCCAGATATGCAAGGTTCCAGCAACAAGACCACGAGACGTGGAGCTGGCAAACGAAAGATTGAGTGA | 1545 | 0.3961 | MSMSQHRGSMNQIVDRVADINPTKLGWNLVVGVVRLYELCSQSNPADVYSLEMVLQDEQGDRIHCSIPKANIVVFKTLIRENGIYSMRNFIVKGNNNFVKTTGHKYKLNFYLKTCVSRLPSDTFHLNPFSYVPLPEIEAMVGMNRIHLLDFIGQVVGKENAQDMVTKSGQQSKCIALYLEDLEQNRMKCTLYGESVEKVISFMDKPENEPVILVAQLFKPHFYLNEVSVQNSLYASRVFFNPDIPDVISFKNSLMKQGERASQPISHIDRQPQYSVSHELSAGAFPVKTIEEILNMTTETLCWVVGTIVSIEVGATDWFYASCKTCPRKVKENKDRYFCEYCGKVGFNPPLRYRLNVVITDGTGCVNVIIWNQEAKLIMGKPASDMRDLSKSESTNSYPKAFDSLLEMKFLFKISVGKKNISTLDQGADPSVSNLLAISGQTDNESDGIGVAVVSLSKDSVMESNSDIGLETPAKSTGVEFVSNSTIMVGMDSPDMQGSSNKTTRRGAGKRKIE* | 515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy9g0898 | 514 | SUPERFAMILY | Nucleic acid-binding proteins | 16 | 122 | IPR012340 | - | |
| Ahy9g0898 | 514 | CDD | RPA1_DBD_B_like | 150 | 255 | - | - | |
| Ahy9g0898 | 514 | Pfam | Replication factor-A C terminal domain | 306 | 420 | IPR013955 | - | |
| Ahy9g0898 | 514 | SUPERFAMILY | Nucleic acid-binding proteins | 286 | 421 | IPR012340 | - | |
| Ahy9g0898 | 514 | MobiDBLite | consensus disorder prediction | 489 | 514 | - | - | |
| Ahy9g0898 | 514 | Gene3D | - | 13 | 118 | IPR012340 | - | |
| Ahy9g0898 | 514 | Pfam | Domain of unknown function DUF223 | 52 | 118 | IPR003871 | - | |
| Ahy9g0898 | 514 | CDD | RPA1_DBD_A_like | 29 | 116 | - | - | |
| Ahy9g0898 | 514 | CDD | RPA1_DBD_C | 304 | 422 | IPR013955 | - | |
| Ahy9g0898 | 514 | Gene3D | - | 124 | 264 | IPR012340 | - | |
| Ahy9g0898 | 514 | PANTHER | BNAC07G49340D PROTEIN | 35 | 420 | - | - | |
| Ahy9g0898 | 514 | SUPERFAMILY | Nucleic acid-binding proteins | 129 | 254 | IPR012340 | - | |
| Ahy9g0898 | 514 | MobiDBLite | consensus disorder prediction | 489 | 504 | - | - | |
| Ahy9g0898 | 514 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 35 | 420 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
| Ahy9g0898 | 514 | Gene3D | - | 277 | 430 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy9g0898 | Ahy-Chr9 | 16262921 | 16265391 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy9g0898 | 7 | 419 | Core DNA Replication Machinery Family | AT5G08020 | 24.318 | 9.40e-19 | 87.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy9g0898 | - | - | ahf:112695129 | 546.969 |