Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g0780 ATGAGCAACTGGTTGGGGTTTTCTCTGACTCCACACCTGAGGATTGATGAAGAATTTGAGAGACAAAATGAAGAGCGTGGAAATGGAGGATCTTATCCTCCTCCTGTGATGCCTTTGCGCTCTGATGGCTCTCTTTGTGTTGCTGACTCCTTTTCTCGCTCTGCTGCACCTCATGAATGGAGATATGAGAATGCAATGGGAAGTGGAAATTCAAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTAGGATGCTACTCAAATCCATCACCACTTGCGGAAACCAAAGCATTTTGTCAGCAAAACCGAAACCAAAACCAACAAAACAACTTCTCAAAGATGAATATGAATGTTGAAACATCATCGTCACTGTTCCAATCATTCAATCCCTACAATGATAGCAGAAGCAACCACAACCATCATCATCATCATCATGCTCTCATAGCGGGCAACGGGGTTTACAAGTCATCATGGTTGGCACAAACTTGTTGCTCATCTTCATCTTCAGCGGAGGCAAATCAAAATAGTAGTAGTAATAATAATAATAATAATGGTGGGTGCAATTTCCAATCTCTGTCACTGACTATGAGTCCGAGCAGTGTTCAACAACAAGAACAAAATGGTGGGGTGGTGGTGGTGAGTGGAATGAACCACCAAGTAGTGCTTCATAATCAACATAATCAGGTTGATGATGACACTCGTAAAAGATCCATTGCTAAATCTCAAGGGAGAGAACCGGTGCCTCGAAAATCTATTGACACTTTTGGCCAGAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACGGGTAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGACAAACAAGAAAAGGAAGGCAAGTTTACCTTGGTGGTTATGACAAAGAAGAAAAAGCAGCAAGAGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGAACAGACAAGAATTTGTCGCCAATTTGAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGCGTGACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGTATAGGAAGGGTTGCAGGCAACAAGGACTTGTATCTTGGTACATTTAGTACACAAGAAGAAGCTGCAGAAGCATATGATATTGCAGCAATCAAGTTCAGGGGAACAAGTGCCGTGACCAATTTCGACATAAGCAGGTACGACGTGAAGAGGATTTGCTCGAGTTCGACCCTAATCGCCGGAGACCTTGCAAAACGGTCTCCTAAAGACTCAGCTCTGGCCACCGCCGAGGACTTCAACTCATCCGGTTCGGCCGCCACACCTTCTCAACCAACTCCCCTGGCAATAACTGATGGTGAACAACACTCTGATGAGTTGTCCAACATGGTGTGGAATGGCAACAGCGACGAGCAACAGCAGAATGAGAGCGGAACCATCAACAGCAATGTCGCCGGTCCATTGTCGCAGCAGGTTTCGCCAAGCAACAAGAACGAGGCGAACCCGCCGCAAAGCCCCAATGAATTTGGGGTCAATGGAACGGATTATGGACATGGATATTTCACTCTGCATGGACCACCAAAATATGATGATGGAAACAATGAAAATGAACACAGGATTGGGAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1743 0.4452 MSNWLGFSLTPHLRIDEEFERQNEERGNGGSYPPPVMPLRSDGSLCVADSFSRSAAPHEWRYENAMGSGNSNEEGPKLEDFLGCYSNPSPLAETKAFCQQNRNQNQQNNFSKMNMNVETSSSLFQSFNPYNDSRSNHNHHHHHHALIAGNGVYKSSWLAQTCCSSSSSAEANQNSSSNNNNNNGGCNFQSLSLTMSPSSVQQQEQNGGVVVVSGMNHQVVLHNQHNQVDDDTRKRSIAKSQGREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMNRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSALATAEDFNSSGSAATPSQPTPLAITDGEQHSDELSNMVWNGNSDEQQQNESGTINSNVAGPLSQQVSPSNKNEANPPQSPNEFGVNGTDYGHGYFTLHGPPKYDDGNNENEHRIGNLGLVNQVPMFALWNE* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g0780 580 Gene3D AP2/ERF domain 259 328 IPR036955 GO:0003700|GO:0006355
Ahy9g0780 580 Gene3D AP2/ERF domain 362 422 IPR036955 GO:0003700|GO:0006355
Ahy9g0780 580 MobiDBLite consensus disorder prediction 223 250 - -
Ahy9g0780 580 PRINTS Ethylene responsive element binding protein signature 402 422 IPR001471 GO:0003700|GO:0006355
Ahy9g0780 580 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Ahy9g0780 580 MobiDBLite consensus disorder prediction 451 534 - -
Ahy9g0780 580 CDD AP2 361 422 IPR001471 GO:0003700|GO:0006355
Ahy9g0780 580 SMART rav1_2 362 426 IPR001471 GO:0003700|GO:0006355
Ahy9g0780 580 SMART rav1_2 260 332 IPR001471 GO:0003700|GO:0006355
Ahy9g0780 580 MobiDBLite consensus disorder prediction 224 246 - -
Ahy9g0780 580 MobiDBLite consensus disorder prediction 451 542 - -
Ahy9g0780 580 SUPERFAMILY DNA-binding domain 361 422 IPR016177 GO:0003677
Ahy9g0780 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 502 - -
Ahy9g0780 580 Pfam AP2 domain 361 412 IPR001471 GO:0003700|GO:0006355
Ahy9g0780 580 Pfam AP2 domain 260 318 IPR001471 GO:0003700|GO:0006355
Ahy9g0780 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 39 502 - -
Ahy9g0780 580 SUPERFAMILY DNA-binding domain 259 328 IPR016177 GO:0003677
Ahy9g0780 580 ProSiteProfiles AP2/ERF domain profile. 362 420 IPR001471 GO:0003700|GO:0006355
Ahy9g0780 580 ProSiteProfiles AP2/ERF domain profile. 260 326 IPR001471 GO:0003700|GO:0006355
Ahy9g0780 580 CDD AP2 259 328 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g0780 Ahy-Chr9 12453271 12459760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g0780 1 448 AP2-EREBP Transcription Factor Family AT1G72570 52.268 1.22e-140 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Ahy9g0780 AP2 4.60E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g0780 K09285 - gmx:100809762 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1020 19 16386850 16393433 Ahy9g0780 9 12453271 12459760 hybridization