LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy9g0684	ATGTCCATAAAGGAGGATGATGTTAAGAATGATTCTGATAATGATTTGGGTGATGATTTCCATTATCAACCGAATGCAGAAGATGATGCTGATGACGACGATGTGGATTCTCTGGATTTCACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCGGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACGGAGGATGAGGTTTGCCAATTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGAAATATGAGGTATCTCGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACGGATGCGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATATGACGCCACCCCAATTTGCGCATCTGGTACCGGCCAATCGACGTCTCACTGTGACTGATAGAGTCCAAGTGGAAAATCTTCATAATTTTGGTGTCAAGAGCTGCCATATTATGGGGTATATTGCATTCCAGAAGGGTGGATATCGTCATGCTGGCTTCACACGGAAAGATTTGTACAACCACATCGATCGCTATCGTCGGGCAAAAGTTAAAAATGGGGATGCCAATGCGGCAATAAACTATTTGATTGATGGGCAGTCAATTATCGACTATCACTGCTTTGGAGATATTGTTGCCTTTGATTCAACCTACAAGAAGAATAAATACAACAAGCCTTTGGTCATTTTCTCTGGATGCAATCATCACGGGCAGACTGTTATCTTCGGCTCCGGCCTACTATCCGACGAAACCACAGAGACGTATAAGTGGTTGTTGGAAACCTTTGTTGAAGCGATGGGTGGGAAAAGTCCAAAAGCAAGAAATGCATGTGAAAATATAAAGAATCCTAATTTCCTACGCGATTTTAAGGGTCTTATATACGACAACAACGACCAGAGAGACTTTGATCGGAGATGGGCAGCCATTTTGGATAAGCACAACCTTGTTGGCAGTACCTGGATGGAGAAGACGTACGAAACTCGTGAGATGTGGTCCCATTGTTTCCTCCGGGATAAGTTTTTCGGTTACATAAGGACGACATCACAGTGTGAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAATGAATTAATAGCTGACTTTAAGTCTCAATGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACGCGAAACATTTTAAAGGAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATAACGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTATTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTTCCTGTAGTCATATCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTTCAGATTCGTTGATATACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACATCGAAAGGGTCTTAAAGTTTCGAGTTGGAGCGTTGGCATCGAATTACAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCACCTGCAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGTTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCCTCGCGATCGATCATACGACAATGCATTAGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCAAGGTCATTCTCAATTAAGTCCGAACACCACTCAGGACCTAATACCAAGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGACAACACTTTTGTCGAGGTGAAGGAGTCACAACAGGACAAGAGACATTCATTCACGAACTATGAATGCGATAATGATGTCATTGATGATAAATGTGACACACGACATGTGCAGATGGATGTCCGAGATCAATTACCGTCGTCACTGTCTTGTGGCAACAAATAA	2397	0.4289	MSIKEDDVKNDSDNDLGDDFHYQPNAEDDADDDDVDSLDFTSKSEEVCGVKRIADLMVEDIWNLEFRTEDEVCQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDLDDRSREARSLTRTKCPARLRVKLDYGCGRWKVSCFVESHNHDMTPPQFAHLVPANRRLTVTDRVQVENLHNFGVKSCHIMGYIAFQKGGYRHAGFTRKDLYNHIDRYRRAKVKNGDANAAINYLIDGQSIIDYHCFGDIVAFDSTYKKNKYNKPLVIFSGCNHHGQTVIFGSGLLSDETTETYKWLLETFVEAMGGKSPKARNACENIKNPNFLRDFKGLIYDNNDQRDFDRRWAAILDKHNLVGSTWMEKTYETREMWSHCFLRDKFFGYIRTTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIADFKSQCSEPVMITSLEVYERSASCYFTRNILKEIRNEIQRAGALNITVLSTTLDKVEFSVTALGDPAKDRRVEVDRGKNLFSCSCKLFESRGISCSHIFCAMKFENILEFSDSLIYKRWTKNAKNEFISTEMPVNDDIERVLKFRVGALASNYNKLCDIACKDLADFDEVQSELVNLVIHLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKYGHYYKRCPDLMQHSVEGNPRDRSYDNALAKDSGFSPERFANSSRSFSIKSEHHSGPNTKPFKKGGTRKFTATGMRNRKGKDNTFVEVKESQQDKRHSFTNYECDNDVIDDKCDTRHVQMDVRDQLPSSLSCGNK*	799

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy9g0684	798	Pfam	FAR1 DNA-binding domain	74	164	IPR004330	-
	Ahy9g0684	798	ProSiteProfiles	Zinc finger CCHC-type profile.	658	673	IPR001878	GO:0003676\|GO:0008270
	Ahy9g0684	798	MobiDBLite	consensus disorder prediction	694	738	-	-
	Ahy9g0684	798	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	57	246	IPR031052	GO:0006355
	Ahy9g0684	798	SUPERFAMILY	Retrovirus zinc finger-like domains	644	676	IPR036875	GO:0003676\|GO:0008270
	Ahy9g0684	798	ProSiteProfiles	Zinc finger SWIM-type profile.	506	542	IPR007527	GO:0008270
	Ahy9g0684	798	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	246	321	IPR031052	GO:0006355
	Ahy9g0684	798	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	333	620	IPR031052	GO:0006355
	Ahy9g0684	798	MobiDBLite	consensus disorder prediction	1	24	-	-
	Ahy9g0684	798	SMART	26again6	517	544	IPR006564	GO:0008270
	Ahy9g0684	798	Pfam	MULE transposase domain	259	320	IPR018289	-
	Ahy9g0684	798	MobiDBLite	consensus disorder prediction	1	36	-	-
	Ahy9g0684	798	MobiDBLite	consensus disorder prediction	700	718	-	-
	Ahy9g0684	798	PANTHER	OS03G0181600 PROTEIN	57	246	-	-
	Ahy9g0684	798	PANTHER	OS03G0181600 PROTEIN	246	321	-	-
	Ahy9g0684	798	PANTHER	OS03G0181600 PROTEIN	333	620	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy9g0684	Ahy-Chr9	10513529	10516471	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Ahy9g0684		FAR1	4.10E-19	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy9g0684	-		K17604	ahf:112755379	1530