Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g0487 ATGAGCTCCTCAAACTTCACCATTACAACACGCACTGGCAACAGCACCACCCAGGCCTGTGCTGCCTGCAAATACCAACGCCGCAAATGCGCTCCCGATTGCATTCTCGCCCCCTATTTCCCCCATGACCGCCAACGCCAGTTCCTCAACGCTCACAAGCTTTTCGGCGTAAGCAACATCACTAAGATCATCAAGGTCCTTAATCCTCACGAAAAGGACGAAGCTATGAAAACCATCATCTTTCAATCCGATATGCGAGCCAAGGACCCCGTTGGCGGTTGCTATCGCATGGTACAAGATCTTCAGGCTCAGATCGAGTTTCACCTCTCCGAGTTGGAGCTCGTGCTTCAACAATTGGCTATACTTAGAGCCCAGGCCCAACATCAACAGGCCCAACATCTTTATAACCAAACCGCCACCAGTAATATTAATGTCAGCGTCAACGGAGATGACAGCATCAATTCAGATCCCTTGACGCTGTACAGTTCTGGTGGCAGCGGCGGCCTTGTTGTTGGTGGAAATGGCGTTAACCATTACCATTACCTTCAACAAATGCCGCATCACGATCAGTATATGATGGTGCAAGAGGTGAATGATAGCAGTAGCAACAACGGTACCCCTTTGCAAGAACATGCTAACATGTGGTCCATGCAAAATTCGCTTTCGTCGTTGTCGTTGCAGGGGCAGAATAGTAACTGTAGTGTTGGTGATGAGTATGATCATAAGCCAATGCTTGACATGGCTTCCGATGACAGAAATGAACTTGGATTTGAGCCTCAAGATTTAGTTCAGCGCAGTGATGAAGCAGTTTTGTTTAAGATAGATGATGCTGTAATAAAAGCAGAAACTGATTGCTTCCAACAAGTTCAAGACCATGATCTGAAAGGTGCAGCAACTTTGTTTACACTCACAAATTGTACTAGCTGA 927 0.4682 MSSSNFTITTRTGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKVLNPHEKDEAMKTIIFQSDMRAKDPVGGCYRMVQDLQAQIEFHLSELELVLQQLAILRAQAQHQQAQHLYNQTATSNINVSVNGDDSINSDPLTLYSSGGSGGLVVGGNGVNHYHYLQQMPHHDQYMMVQEVNDSSSNNGTPLQEHANMWSMQNSLSSLSLQGQNSNCSVGDEYDHKPMLDMASDDRNELGFEPQDLVQRSDEAVLFKIDDAVIKAETDCFQQVQDHDLKGAATLFTLTNCTS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g0487 308 Coils Coil 98 132 - -
Ahy9g0487 308 Pfam Lateral organ boundaries (LOB) domain 19 114 IPR004883 -
Ahy9g0487 308 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
Ahy9g0487 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 13 242 - -
Ahy9g0487 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g0487 Ahy-Chr9 6457530 6459757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g0487 18 261 AS2 family AT3G13850 48.178 5.46e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy9g0487 LOB 5.00E-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0239 18 1918166 1919582 Ahy9g0487 9 6457530 6459757 PCT
Ahy8g1027 8 25087036 25088525 Ahy9g0487 9 6457530 6459757 PCT
Ahy9g0487 9 6457530 6459757 Ahy18g0239 18 1918166 1919582 PCT
Ahy9g0487 9 6457530 6459757 Ahy8g1027 8 25087036 25088525 PCT