LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy9g0398	ATGGTGGCATCATCAGACAATACTAGTAGCCACGGTAGAGATTGTGGAAAGCTTCTTGCCCCATCATCAAAGTCATGTAAGCTACTAAAAAAATATCCGCAAAATAAGAGACGGTTACAGTGTAAGTTTTGCAACAAGAAATTCTCCAATAGCCAAGCTTTGGGAGGGCATCAGAATGCACACAAATTGGAGAGAGCCGCGGTGAAGAGAGACAACATTCTCGCCATGGCGTCTGCTTATATCAACTACTTACCACCATCTCAGTCTAATATGCAAAATTATTATTCAAATTTTTCTGCTTTTAGTCATAGTAGTAGAACATTAGGGATGCAACAACCACCACAAGCAATGATTCATAATAGGTCTTCAATTGCACTTGGACCTGGGTACCTTCATAATGTATTGTTGGAAAATCAAATCATGAATCCTCAACGTAGCAGGCATCATTCGCCGCCGGGACCGGTGTTGCCGCCGCAGGACAGAGAAGTATTGCCGCAAAAAGAATTATTGACAATGAATTTGTTACCACAACAGTCACGGTTGAGTTTAGGTGAAAACATGAATCCAAACCAAACAAATAAACAACAACAACAACCAGGTAATGTTGTAGCATTGCATGAATTACAATTATATAACTTTTAA	642	0.3972	MVASSDNTSSHGRDCGKLLAPSSKSCKLLKKYPQNKRRLQCKFCNKKFSNSQALGGHQNAHKLERAAVKRDNILAMASAYINYLPPSQSNMQNYYSNFSAFSHSSRTLGMQQPPQAMIHNRSSIALGPGYLHNVLLENQIMNPQRSRHHSPPGPVLPPQDREVLPQKELLTMNLLPQQSRLSLGENMNPNQTNKQQQQPGNVVALHELQLYNF*	214

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy9g0398	213	ProSitePatterns	Zinc finger C2H2 type domain signature.	41	61	IPR013087	-
	Ahy9g0398	213	PANTHER	C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN	32	146	IPR044246	GO:0009788
	Ahy9g0398	213	SUPERFAMILY	beta-beta-alpha zinc fingers	36	66	IPR036236	-
	Ahy9g0398	213	Gene3D	Classic Zinc Finger	21	81	-	-
	Ahy9g0398	213	ProSiteProfiles	Zinc finger C2H2 type domain profile.	39	66	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy9g0398	Ahy-Chr9	4797753	4798394	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy9g0398	32	75	C2H2 Transcription Factor Family	AT5G14010	55.556	1.76e-10	55.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Ahy9g0398		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy9g0398	-		-	ahf:112708745	423.32