Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g0394 ATGCACCAAACAGGATCACCAGCAAATCTTCCAGTTTGTTTCTTCAGAATGTACTTCGAGAACACGAAGAAGTATGCAATTCTACGAGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCATATAGGAAGACTGCTCTTATCTCTAGTTGGCGCTTGTTCCTTGAAGAAAATAACTTAAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGACAACGTCCAGATCTTCAGGTTCATATTCGTCGAAGCCATGATTAG 270 0.4 MHQTGSPANLPVCFFRMYFENTKKYAILRVGKKQWHATLIYYPYRKTALISSWRLFLEENNLKAGDVCIFELINRQRPDLQVHIRRSHD* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g0394 89 SMART B3_2 1 88 IPR003340 GO:0003677
Ahy9g0394 89 SUPERFAMILY DNA-binding pseudobarrel domain 9 87 IPR015300 -
Ahy9g0394 89 PANTHER B3 DOMAIN-CONTAINING 5 87 - -
Ahy9g0394 89 Pfam B3 DNA binding domain 10 87 IPR003340 GO:0003677
Ahy9g0394 89 ProSiteProfiles B3 DNA-binding domain profile. 1 88 IPR003340 GO:0003677
Ahy9g0394 89 CDD B3_DNA 10 86 IPR003340 GO:0003677
Ahy9g0394 89 Gene3D - 2 89 IPR015300 -
Ahy9g0394 89 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g0394 Ahy-Chr9 4736307 4737003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g0394 22 84 REM Transcription Factor Family AT4G33280 29.688 2.45e-08 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy9g0394 B3 1.30E-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g0394 - - adu:107481583 189.119