LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy9g0387	ATGGCAGTTACATTGTATGACCTTGGCTCTGCATCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCACCCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACCTTACAGTGTATGCAGCTTTATCAAAAGTTCCATCTGATGAATATGTGAATGTGTCCAGGTGGTACAAGCATATCGATGCATTGTTGAGAATCTCGGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTGAAGTCTTCTCTCGTCGCGGAAGCTGTTGCCACTCCTCCACCAGCTGACTCTAAGGCTGCTGCGGCTGATGATGACGATGATGATGATGTGGATCTCTTTGGTGAAGAGACTGAGGAGGAGAAGAAGGCTGCCGAGGAACGTGCTGCTGCGCTAAAGGCATCTGGAAAGAAGAAAGAGTCTGGAAAATCATCTGTTTTGATGGATATCAAGCCATGGGATGATGAAACTGACATGAAAAAGCTTGAAGAAGCAGTGAGAGGTGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTTGTTCCTGTTGGGTATGGTATCAAGAAACTGCAAATTATGCTCACTATTGTGGATGATTTGGTATCTGTCGATTCTCTCATCGAGGAGCAACTTACTGCCGAGCCGATCAACGAATATGTCCAGAGTTGTGACATTGTTGCTTTCAACAAAATATAA	693	0.4545	MAVTLYDLGSASGLKKLDEYLLTRSYITGYQASKDDLTVYAALSKVPSDEYVNVSRWYKHIDALLRISGVSGEGSGVTVKSSLVAEAVATPPPADSKAAAADDDDDDDVDLFGEETEEEKKAAEERAAALKASGKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTAEPINEYVQSCDIVAFNKI*	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy9g0387	230	SMART	EF1_GNE_2	141	230	IPR014038	GO:0003746\|GO:0006414
	Ahy9g0387	230	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	105	113	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Ahy9g0387	230	SUPERFAMILY	eEF-1beta-like	138	230	IPR036219	-
	Ahy9g0387	230	CDD	EF1B	139	230	IPR014038	GO:0003746\|GO:0006414
	Ahy9g0387	230	PANTHER	ELONGATION FACTOR 1-DELTA 1-RELATED	1	230	-	-
	Ahy9g0387	230	SUPERFAMILY	GST C-terminal domain-like	12	67	IPR036282	-
	Ahy9g0387	230	Gene3D	-	6	81	-	-
	Ahy9g0387	230	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	230	-	-
	Ahy9g0387	230	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	219	230	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Ahy9g0387	230	Coils	Coil	113	133	-	-
	Ahy9g0387	230	Gene3D	-	134	230	IPR014717	-
	Ahy9g0387	230	Pfam	EF-1 guanine nucleotide exchange domain	143	230	IPR014038	GO:0003746\|GO:0006414

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy9g0387	Ahy-Chr9	4571270	4573562	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy9g0387	7	230	Eukaryotic Initiation Factors Gene Family	AT2G18110	82.301	9.98e-117	331

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy9g0387	K03232		-	gmx:100777627	338.191