Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g0345 ATGAGCAATGAGATCGCACAGAAGCCTCCCCCTTCCATGCTCGTTGACAGGTTCAAGGCTATGCTCAAGCAGCGCGACGACGAGCTCAGGGCCACCGCCGGTCACGTGTCCCCTCCGTCTACGGAAGAAATCGTTCAGCTGTACGAGATGCTGCTGTCGGAGCTCACGTCCAATCAGAAGCTCATTATCAACGATCTCACCTTCATCGCTGTGCACCAGAGTGAGCATGCCAGGGGCATCGCCGACGCTATCTGCGCTCGGATTCTCAAGGTGCCTGCAGAGCAAAAGCTTCCTTCACTCTATCTCTTGGACAGTATAGTGAAGAACTTTGGAGAGGAATATGTTGAATACTTTGCATTACGCCTGCCCGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTCATTTGCACCCTGCTATGCACCATCTCTTTGGCACCTGGTCAGAAGTCTTTCCACCGTCTGCCCTACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAAGTAACTGCGGCAGTTGGAGCGCTCAACTGTGGATAG 540 0.5278 MSNEIAQKPPPSMLVDRFKAMLKQRDDELRATAGHVSPPSTEEIVQLYEMLLSELTSNQKLIINDLTFIAVHQSEHARGIADAICARILKVPAEQKLPSLYLLDSIVKNFGEEYVEYFALRLPEVFCEAYRQVQPHLHPAMHHLFGTWSEVFPPSALRKIEAELQLSQVTAAVGALNCG* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g0345 179 CDD CID_Pcf11 45 164 - -
Ahy9g0345 179 Pfam CID domain 50 158 IPR006569 -
Ahy9g0345 179 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 7 170 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ahy9g0345 179 Gene3D - 35 166 IPR008942 -
Ahy9g0345 179 ProSiteProfiles CID domain profile. 40 168 IPR006569 -
Ahy9g0345 179 SMART 558neu5 43 165 IPR006569 -
Ahy9g0345 179 SUPERFAMILY ENTH/VHS domain 40 164 IPR008942 -
Ahy9g0345 179 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 7 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g0345 Ahy-Chr9 3925725 3929325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g0345 1 175 C2H2 Transcription Factor Family AT4G04885 64.045 8.89e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g0345 K14400 - ahf:112776805 323.553