Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g0313 ATGATGGATGATAGTAGAAGAAGGAGAAGAAGCAGCCACAACAAGTTTTCAGAGGAAAAGGAACTAGAACTAAGACTTGGTCCACCTGGTGAAGAAGAAGAAGAAGATGAAGAAAAAGATGAAGATTATTGGTCTCATCACAATGAAAACAAGAGAGAAAGAAACAGTGATGAATCAGATCAATCACCACTCTCTCTTGGTTACTTCTCATCCCAGAGAATTTACAACTACCACCAGGACCAGGCTACTAAGGCTAAAGCTTCATCATTTCTTCAGAACATGTCAATGGTGGGAAAGGAATCAAAGGATGCAATATCATCATCACAACCATGTCGTTCTGAAGTGATAGAGTTTCATAATGGTGCAGTCTGTGCAGAGAAGAAAGCATTATCATCACCTTCTTCTGCAAATACAGCTGCCCCCAACAGCTCTCAGAAAAGAAGTGCAGCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTCAGGAAGAACAATGCAAGTGGAAGCACTTTTTCTAAGCCCCCTCTTGGGTCCCACCACAACCATCATCATCATCTTAATCTTAATGTGGAAGACAAGGCTGCTAATAATACTACTAATAAGGAACATGTTAACAACATTAGTGGTCCTCCTAATAAAGGCATGTTTGTGAAGATCAATATGGATGGAATTCCAATTGGGAGAAAAGTGGATATTAATGCTTATGGCAGCTATGACAAACTTTCCTCTGTTGTTGACCACCTCTTTAGAGACCTCCTTTCAGCTCAAAGAAGAGATTCGTGTGGTGGTGGAAGTATTAAAAAGCAAAATCAAGAGGAAGAGAAAACAATGATAACAACGGGTGTATTAGATGGAAGTGGGGAATATACTCTTATTTATGAAGATAATGAAGGAGACAAGATGCTTCTTGGGGATGTCCCATGGCACATGTTTGTATCAACAGTGAAGAGATTGCGAGTGTTGAAGAAATCTGATCTTGCAGCTCTTTCACTTGGTGGTAAGCAAGGCCACATACACCACTCAAAAAATGAAGGTTGA 1041 0.4054 MMDDSRRRRRSSHNKFSEEKELELRLGPPGEEEEEDEEKDEDYWSHHNENKRERNSDESDQSPLSLGYFSSQRIYNYHQDQATKAKASSFLQNMSMVGKESKDAISSSQPCRSEVIEFHNGAVCAEKKALSSPSSANTAAPNSSQKRSAAGPVVGWPPIRSFRKNNASGSTFSKPPLGSHHNHHHHLNLNVEDKAANNTTNKEHVNNISGPPNKGMFVKINMDGIPIGRKVDINAYGSYDKLSSVVDHLFRDLLSAQRRDSCGGGSIKKQNQEEEKTMITTGVLDGSGEYTLIYEDNEGDKMLLGDVPWHMFVSTVKRLRVLKKSDLAALSLGGKQGHIHHSKNEG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g0313 346 MobiDBLite consensus disorder prediction 41 59 - -
Ahy9g0313 346 MobiDBLite consensus disorder prediction 163 177 - -
Ahy9g0313 346 MobiDBLite consensus disorder prediction 129 184 - -
Ahy9g0313 346 Gene3D - 211 335 - -
Ahy9g0313 346 MobiDBLite consensus disorder prediction 1 27 - -
Ahy9g0313 346 MobiDBLite consensus disorder prediction 130 149 - -
Ahy9g0313 346 ProSiteProfiles PB1 domain profile. 215 324 IPR000270 GO:0005515
Ahy9g0313 346 MobiDBLite consensus disorder prediction 1 65 - -
Ahy9g0313 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 8 337 - -
Ahy9g0313 346 Pfam AUX/IAA family 21 330 IPR033389 -
Ahy9g0313 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 337 IPR003311 GO:0005634|GO:0006355
Ahy9g0313 346 SUPERFAMILY CAD & PB1 domains 209 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g0313 Ahy-Chr9 3549954 3558773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g0313 219 335 B3 DNA Binding Superfamily AT4G23980 29.915 2.93e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ahy9g0313 AUX_IAA 5.30E-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g0313 K14484 - tcc:18596026 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0193 18 1511025 1513544 Ahy9g0313 9 3549954 3558773 PCT
Ahy9g0313 9 3549954 3558773 Ahy18g0193 18 1511025 1513544 PCT