Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2761 ATGGATGGTAGGTGCAGGAAAGAGGAGAATACAATGGCAGTGGAAATTGCAATCCAGAGAGAGCTGGCACATAGGAAGAAGGTGGCAGCACCACATTTGAGATCACCAAATTCTAATTCCACTAAGGAGGTTTTTCCTTTACAGGTTACATCACCAAGTCAAGCATTACCAGGTTCAACTCCAAGGCTATGTTTGAGTCAACATCTTTCTGGAACCAAGAGAAAGAAAACATTAGTCAATGCAGAGGCAGATAATAGTGTGTACTGCAAAATCTGCCAAGTATCTTGCTCAAGTCCATTCAATCTCAAGCAGCATTTGATAGGCCACAAGCACAGGGAGAAGCTGCTAGAACTCGAATCCGGCGAGAAAGCTGGAACAAGTGAGAGTAATAGATGCTATGAGAGGCAATGGTGTGATATATGCAAAGTTTCATGTATGAATGAAGAGTTGCTGAAGCTTCATTTTCAAGGTAAAAAGCACAAGGCTCAATTACAGAGGTTGGAATTTGATCAGCAAGGTGGTGTGCAGCTTCAAAATAAGCAACAAAAATGGTGTGAACTATGCAAATTATGGTGCATTGATGAGTTTTCATTCGAGCAACATCTTCAAGGTAGAAAACACATCTTGCAGCTGCATGCTATGGAGAAAGAAAAAAAAAATTAA 663 0.4072 MDGRCRKEENTMAVEIAIQRELAHRKKVAAPHLRSPNSNSTKEVFPLQVTSPSQALPGSTPRLCLSQHLSGTKRKKTLVNAEADNSVYCKICQVSCSSPFNLKQHLIGHKHREKLLELESGEKAGTSESNRCYERQWCDICKVSCMNEELLKLHFQGKKHKAQLQRLEFDQQGGVQLQNKQQKWCELCKLWCIDEFSFEQHLQGRKHILQLHAMEKEKKN* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2761 220 Pfam Zinc-finger of C2H2 type 88 111 - -
Ahy8g2761 220 Pfam Zinc-finger of C2H2 type 137 160 - -
Ahy8g2761 220 Pfam Zinc-finger of C2H2 type 184 207 - -
Ahy8g2761 220 PANTHER ZINC FINGER RNA-BINDING PROTEIN 84 215 - -
Ahy8g2761 220 Gene3D Classic Zinc Finger 79 126 - -
Ahy8g2761 220 Gene3D Classic Zinc Finger 177 219 - -
Ahy8g2761 220 Gene3D Classic Zinc Finger 127 176 - -
Ahy8g2761 220 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 84 215 - -
Ahy8g2761 220 SMART c2h2final6 183 207 IPR013087 -
Ahy8g2761 220 SMART c2h2final6 136 160 IPR013087 -
Ahy8g2761 220 SMART c2h2final6 87 109 IPR013087 -
Ahy8g2761 220 SUPERFAMILY beta-beta-alpha zinc fingers 84 117 IPR036236 -
Ahy8g2761 220 SUPERFAMILY beta-beta-alpha zinc fingers 179 214 IPR036236 -
Ahy8g2761 220 SUPERFAMILY beta-beta-alpha zinc fingers 127 168 IPR036236 -
Ahy8g2761 220 SMART ZnF_U1_5 133 167 IPR003604 GO:0003676|GO:0008270
Ahy8g2761 220 SMART ZnF_U1_5 180 214 IPR003604 GO:0003676|GO:0008270
Ahy8g2761 220 SMART ZnF_U1_5 84 118 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2761 Ahy-Chr8 51053919 51056743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g2761 62 215 C2H2 Transcription Factor Family AT5G61190 25.543 4.73e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy8g2761 zf-met 1.30E-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g2761 - - aip:107619886 436.417