LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g2754	ATGGGTCTAACAGAAGAACAGAGGCAACAAATCGAAGCAAATCGTCAAGCCGCTCTCGCCAAACGCAAAGCATTTCTTGAATCCCAACAACAACAACAACAACAACTACTTTTCAAATGCCAGAAGCTCTCTCATTCTCGCTACTCTTCTTCAACATCCAAACCCGCCCTTATTCCAAAGTTCGTTGCCAGGCTCGAAATATGCTCTCCAGATTCCTTCTCCGTTGTGCCTATCCCCTCCGACGACGACACCTTCTCCGCCCTCAACGGCCTCCTCTCCGACCTCCTCCCCTCTCACTTCACTCAGATCTCCACCGCCGTTGCCGATGCCTCTGTCTACCACCTCTCCGACTACCTCCGCGTCCTCAACTGCCTCAAGGCAGCATCTCACCAGATTGCTGACGTGGAGGACATTCCCTGGAACACGCTCAAAGCCGTTGAGACCATGATGCTGGCGTCTGGTGGTGGCGGCACCTGGACGCCGACCAGGCCCGAGCATCTCACCGACGAGCAGGTCGAAGACCTCATCGCGAAGCTTCCGAGGAGTTTGGTGGATGCTCTGATGCCATTTCAGTTGGATGGGATTAGGTTTGGACTCAGAAGGGGTGGAAGGTGCCTCATTGCCGATGATATGGGACTCGGAAAGACCCTCCAGACACAAGCTGTTCTTGATGTGGCAACGAAAGTCAAGCATATAGTTCTGCTATCAGGAACGCCCTCATTGTCAAGACCATTCGACATTTTTCATCAGATAAATATGTTATGGCATGGTTTGTTGGGGACAAATAAACGCGAGTTTGCAAAAACCTATTGTGACATGAAATTTTTCATGGGCATCCAAGGAAAAGTGTTTGCGGATTATTCAAAGGGCATTCGGTTGGTGGAGTTGAACGTGTTACTTAAGCAAACTGTTATGATAAGGCGTTTGAAGGAACATGTGATGCTACAGTTACCTCCAAAGCGGCGGCAAATTATAAGACTGTTGTTGAAGAAATCAGATATTGTTGCTGCAAAAACTGCAGTTGGGGCATTGACAATTGATGACCCTGAACGTGCAAGTGAAGACATGCCTCTAGGAAACTCAGATGAAGTTGATGGGGACCTTTCTGTCCAAGAACTTGGGATTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCACTCATAGCAGGATCGGAGAATTCTAAAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGTGTAGGTTTTGTGCGAATTGATGGAAGTACTCTTCCAAGAGATAGGCAATCAGCAGTAGTAGCATTTCGATCATCATCAGAGGTTAAAATTGCGATAATAGGTATTTTGGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTGGTGTTCTTGGAGCTACCTCAGTGCCCAACTGTAATGCTTCAGGCCGAGGATAGAGCTCATCGACGGGGGCAAAAAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTCGGATGAGTTGCGTTGGAAAAACTTGAATAAAAGTTTGCACCGTGTTTCAAAAACAACAGACGGAAAATATGATGCAATGAAGGAGATAGTGGTTGATGATATTTCTTACTTAGAGACATATTTCAAAACTGATAGTTCTGAGGAGCAATCTGCACGTGAAAAGGCATTAGTTGAAACACTGTTGGATAAGAAACCTTCCCCAGTAAATTTAAGTGAATCTGAAGTAAAACAAGATGATAAATCTGATGAGCAGGCTTCTTTTGACAATAACTCAATTTCTACTGCTAATATCACGGTGCAGGACAAGAAATCAATTCCAACAGTAGAAGCAGATGACATGCAGCCTGACCATCAACTAGAAACAGATGGACATGGGTCTAGTCATGTTGGTTCTCTGCGTTTTGAGGTGAGCCCATACACTGGTAGGATCCACTTGTATTCTTGCGTTTTGGGTACAGATGCAAGACCGCAGCCACTTTATGAAAATTTCCGACCAGAGGAACTTGAGTTGCTATGTCCTGTTTCTGATGATGAGAAAAAGAAGATAGAAGTTAAATCTGTCAAGGAGAATCCTGTTTATAGGCATTCTCTCATGGAGTTTGCACATGAGTGGAGGAGTTTGAGGCCAATTGAACGCAAGAAGTTACTTGGGAAACCATTACAGCTTCCTTTGGCAGTTGAATTATGCTATTTGAGTGAAAGCAATAACCACAATAACAAGGGGTTATTAAATGGTGGAAGCAAACGACGTATGACACCTTTGGTGGAGGTCTGCCATCCTTTACCCGAAGACGCTGTGTGGAAGAAGGTTTATCTACGAAGTGGCCTTGGTAAGAAGGAAAAAGAATATACTCAAGGCTGGAGTGTGACTGATGAACCACTCTGTAAGCTTTGTCAAAAGCAGTGCATGGGTAAGAATGCCAAGGCACCTGAATTTTTCGAAGACCTGTTTTGTAACCTTGCCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAGATTCTTACGTCAGGAACTTTTCCAAATTGAACATGGTGTGTGCACAAATTGCCTATTGGATTGCCATAAGCTTGTTGAGCACATAAAACCTTTATCATTGGAAAGGCGACGAGAGTACATTGAGAAAGTAGCACCAAAAGTCGCAAAGCGGAAGAAGATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCATGCTGATCATATAATTCCAGTGTATCAAGGCGGAGGTGAATGCAAACTAGAAAATATGAGGACTCTGTGTGTGGCCTGCCATTATGATGTTACCAAAGAACAGTGTGATGAACGACGCAAAGCAAGAGCAAATGCCAGGAAACACCTAAAATTTGTAATGAATAACCTTAAAAATGGTCTGACGGGCACTACTGTCTCTAATGCTAAGGAGCATGAGGCACAGGAAGGAGATAAGCTCTTTATCAATGTCCCTGGAAGTGCATATTCTCTAGCTGATCCCTCAGAAAGTGGAAAACATTAA	3033	0.4418	MGLTEEQRQQIEANRQAALAKRKAFLESQQQQQQQLLFKCQKLSHSRYSSSTSKPALIPKFVARLEICSPDSFSVVPIPSDDDTFSALNGLLSDLLPSHFTQISTAVADASVYHLSDYLRVLNCLKAASHQIADVEDIPWNTLKAVETMMLASGGGGTWTPTRPEHLTDEQVEDLIAKLPRSLVDALMPFQLDGIRFGLRRGGRCLIADDMGLGKTLQTQAVLDVATKVKHIVLLSGTPSLSRPFDIFHQINMLWHGLLGTNKREFAKTYCDMKFFMGIQGKVFADYSKGIRLVELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLLKKSDIVAAKTAVGALTIDDPERASEDMPLGNSDEVDGDLSVQELGIAKLSGFREWLSLHPLIAGSENSKKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGSTLPRDRQSAVVAFRSSSEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQKNAVNVYIFCAKDTSDELRWKNLNKSLHRVSKTTDGKYDAMKEIVVDDISYLETYFKTDSSEEQSAREKALVETLLDKKPSPVNLSESEVKQDDKSDEQASFDNNSISTANITVQDKKSIPTVEADDMQPDHQLETDGHGSSHVGSLRFEVSPYTGRIHLYSCVLGTDARPQPLYENFRPEELELLCPVSDDEKKKIEVKSVKENPVYRHSLMEFAHEWRSLRPIERKKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRMTPLVEVCHPLPEDAVWKKVYLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCMGKNAKAPEFFEDLFCNLACYEEYRMRTSNRFLRQELFQIEHGVCTNCLLDCHKLVEHIKPLSLERRREYIEKVAPKVAKRKKMLEKLVNDPTEGNAWHADHIIPVYQGGGECKLENMRTLCVACHYDVTKEQCDERRKARANARKHLKFVMNNLKNGLTGTTVSNAKEHEAQEGDKLFINVPGSAYSLADPSESGKH*	1011

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g2754	1010	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	386	540	IPR001650	-
	Ahy8g2754	1010	CDD	SF2_C_SNF	376	505	-	-
	Ahy8g2754	1010	Pfam	HNH endonuclease	908	942	IPR002711	GO:0003676\|GO:0004519
	Ahy8g2754	1010	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	228	318	IPR027417	-
	Ahy8g2754	1010	SMART	helicmild6	411	494	IPR001650	-
	Ahy8g2754	1010	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	317	571	IPR027417	-
	Ahy8g2754	1010	Pfam	Helicase conserved C-terminal domain	391	494	IPR001650	-
	Ahy8g2754	1010	Gene3D	-	369	598	IPR027417	-
	Ahy8g2754	1010	PANTHER	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3	4	222	-	-
	Ahy8g2754	1010	PANTHER	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3	218	965	-	-
	Ahy8g2754	1010	CDD	HNHc	902	942	IPR003615	-
	Ahy8g2754	1010	PANTHER	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	218	965	-	-
	Ahy8g2754	1010	Coils	Coil	3	23	-	-
	Ahy8g2754	1010	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	169	223	IPR027417	-
	Ahy8g2754	1010	Gene3D	-	832	966	-	-
	Ahy8g2754	1010	MobiDBLite	consensus disorder prediction	576	603	-	-
	Ahy8g2754	1010	Gene3D	-	162	229	IPR038718	-
	Ahy8g2754	1010	PANTHER	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	4	222	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g2754	Ahy-Chr8	51000486	51012357	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy8g2754	352	555	RAD5 or RAD16-like Gene Family	AT1G61140	29.825	4.28e-13	72.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy8g2754	K25861		-	gmx:100788690	1181.78