Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2655 ATGCCTTTTGAAGTAATGAACCAGAGGGGCGTTTCGACCTTGTCTCACTTTTACGACGACATCTCCTTTCCTCCAGAGAAGAATCCTGGATTACGGAAGCAAAAATCTATTCACGAGCGATACCCGCAAGGAAAGAGTGAGATCACAGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCGTGGAATGAATGCAAAAACAGGCTTGCCGATGTCGCAGACTGGTTTATCTTCCGAAGGCACAGGAAGCACACGATTCGGTGGTAAAGAAGGCATTGCAGATGTGCTGAAGGATTCCAAGGAGTTACTTAACTATCATCCAAGATCATGGACTGATGTGCGTATGCAGCCGACATCTAGCTCGTATGGTTTCATTGGGAACAAGATTGTTGCCAATGCTGCCTCTCGTGAAAGCAGTCTATTCTCAAGTTCATTGTCTGATATGTTTACTCAAAAGTTGAGATTAATGGGGAATGATGTTTTCCGGGATCAGTCTGTTTCCGTTGGTTCCCTTCCTGAGGAAGAACCATATAAATCTCTTCAAGAAATTGAGGCTGACACTATTGGGAATCTTCTTCCTGATGAGGATGACCTGTTTTCTGGTGTTGCTGATGAGTTAGGATCCAATGTTCATGCCAAAGCAAATGATGATTTCGAAGATTTTGATTTGTTTAGCAGTGGGGGAGGCATGGAGTTAGAAGGAGATGAACATCTAGTTTCAGGAAAAAGAGCCAGCGGCTTAGAAGGAGATCTTGGTTATTTCGGAGGTTCCAAAGGAAAAATTCCTCTTGGTGACCAATCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAATGTAGATGACTCTGAGCTGAAGACTCTCTTCGAGCAATATGGAGATATCCGAACCATGTATACCGCTTGCAAGCCTCGCGGTTTTGTCATGATTTCTTATTATGATATAAGGGCAGCACAAAATGCAATGAAAGCACTCCAACATAAGTCGTTGAGATCTCGAAAGCTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAAAAGGATATTGGTCATGGTGGTGTGATGATATCTGGTCTTGATTCATCTGTTTCAAATGAGGAACTTAAGCATATTTTCGCATTATATGGAGAAATTAAAGAAATATATGAATCTCCTGAAGTGAATCATGTGAAATTCATCGAGTTCTATGATGTGCGAGCTGCAGAAGCTTCTCTTGGTGCTTCGAACAGGATCTGCATTCCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGAATTGCTATTCTAATGCAGCAGTCTCAAAAGGGACAAGAAGAACCAGATTTTGTTCATAATCTTAGTGATAACTTATTAAGACAGAACGCAACATCTTCTGGAGCAGCCATATCTGGTGGCAGCTTGGAGAGTGGATATAATCAGGGGTTTCAATCTGCAAAAAGGATACCTCTGAATGGTTTTGTTGATAATGCTTTATATCCTGTGGGTTCTAGCATACCAAAGATGGCAAGAGGGGCTTCTGGTGGAAAAGTATCCGGAGTTTACGAGTCTGCAAATGTTGTTGATGCAATGAAACTGGGATCTATTACAAGGTTCCATCCTCATTCTTTACCTGAGTTTCATGATGGTTTAGCTAGTGGTAGTCCCTACAACTTTTCAAACCCCATCAGCAATGTTGCTGCCAGTATTGGAACTGGATCGACAGAATTGTCAGACAGCAGGCATATTCAGGGGATTGGCTCACCTGGCAACCTAGCCGAATTTAATGCAGTAGGAAACGGGAGCCGCCCGCCTCAGGGACTTTATCATATGTGGAACAACTCCAACTTGCATCAGCAACCTCCATCAAATGCCATGCTTTGGCATAAAACACCACCATCCTTTATTAATGGTACTGGTGCTCCTGGTGTTCCGCAGATGCCCGGCTTTCCTAGAACACCACCTCATGTGCTGAGATCATCACAGATAGACCATCATGTCGGATCAGCACCGGTCGTTACTGCCTCACCCTGGGAAAGACAGCCTTCTTACTTGGGAGAGTCTCCTGAAGCTTCTAGTTTTCGAATGGGATCTTTAGGAAGTACAGGTTTTCATGGTTCTTGGCAGATGCATCCTCCGGACTTGTCTTCTCGCAACATGTTTTCTCATGTGGGTGGGAACAGTACAGAACTGTCATCCAGTGCTGGGCAGGGATCTCCTAAGTTGTCACATTTTTTCCCAGGGAGACTTCCCATGAATTCAATGCTGAAGTTTGATTCGGCCAATGAACGGATGAGAAGCCTCTATCATCGTAGAAGTGAAGCAAATACTAACAGTGCTGATAAAAAGCAATATGAGCTTGATCTAGGCCGCATATTGCGCGGGGAAGATAACCGAACCACACTTATGATAAAAAATATTCCAAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATCGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTCATCAACATGATTGACCCTGGTCAAATTATTCAGTTCCATCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAGAAAGTAGCTGTACTTGCATATGCCCGAATTCAAGGAAAAGCTGCTCTGATTGCTCATTTCCAGAATTCAAGTCTAATGAATGAAGATAAACGTTGTCGCCCCATTCTCTTCCACACGGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGAAACAATATTCGAACAAGGCCAGGAAAATCTCGTACGAGTGCTAACGATGAGAATCGCAACCAAGGGAGTTCTTCAGCTGCAGCCGGCGGGGATGAATCTGCTAATGGAGTAGAGTCATCCTTGAGTTCATCGAAAACCTGA 2910 0.4344 MPFEVMNQRGVSTLSHFYDDISFPPEKNPGLRKQKSIHERYPQGKSEITASPGSILNASSPRGMNAKTGLPMSQTGLSSEGTGSTRFGGKEGIADVLKDSKELLNYHPRSWTDVRMQPTSSSYGFIGNKIVANAASRESSLFSSSLSDMFTQKLRLMGNDVFRDQSVSVGSLPEEEPYKSLQEIEADTIGNLLPDEDDLFSGVADELGSNVHAKANDDFEDFDLFSSGGGMELEGDEHLVSGKRASGLEGDLGYFGGSKGKIPLGDQSSRTLFVRNINSNVDDSELKTLFEQYGDIRTMYTACKPRGFVMISYYDIRAAQNAMKALQHKSLRSRKLDIHYSIPKGNAPEKDIGHGGVMISGLDSSVSNEELKHIFALYGEIKEIYESPEVNHVKFIEFYDVRAAEASLGASNRICIPGKQIKLEPGHPRIAILMQQSQKGQEEPDFVHNLSDNLLRQNATSSGAAISGGSLESGYNQGFQSAKRIPLNGFVDNALYPVGSSIPKMARGASGGKVSGVYESANVVDAMKLGSITRFHPHSLPEFHDGLASGSPYNFSNPISNVAASIGTGSTELSDSRHIQGIGSPGNLAEFNAVGNGSRPPQGLYHMWNNSNLHQQPPSNAMLWHKTPPSFINGTGAPGVPQMPGFPRTPPHVLRSSQIDHHVGSAPVVTASPWERQPSYLGESPEASSFRMGSLGSTGFHGSWQMHPPDLSSRNMFSHVGGNSTELSSSAGQGSPKLSHFFPGRLPMNSMLKFDSANERMRSLYHRRSEANTNSADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIQFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRTRPGKSRTSANDENRNQGSSSAAAGGDESANGVESSLSSSKT* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2655 969 SMART rrm1_1 356 424 IPR000504 GO:0003723
Ahy8g2655 969 SMART rrm1_1 797 875 IPR000504 GO:0003723
Ahy8g2655 969 SMART rrm1_1 271 339 IPR000504 GO:0003723
Ahy8g2655 969 Gene3D - 355 449 IPR012677 -
Ahy8g2655 969 SUPERFAMILY RNA-binding domain, RBD 267 426 IPR035979 GO:0003676
Ahy8g2655 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Ahy8g2655 969 Gene3D - 249 351 IPR012677 -
Ahy8g2655 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Ahy8g2655 969 CDD RRM1_MEI2_like 269 344 IPR034453 -
Ahy8g2655 969 Gene3D - 789 881 IPR012677 -
Ahy8g2655 969 Pfam RNA recognition motif 2 795 891 IPR007201 -
Ahy8g2655 969 MobiDBLite consensus disorder prediction 18 56 - -
Ahy8g2655 969 MobiDBLite consensus disorder prediction 928 969 - -
Ahy8g2655 969 MobiDBLite consensus disorder prediction 906 969 - -
Ahy8g2655 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Ahy8g2655 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Ahy8g2655 969 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 968 - -
Ahy8g2655 969 CDD RRM3_MEI2_like 798 883 IPR034454 -
Ahy8g2655 969 SUPERFAMILY RNA-binding domain, RBD 797 882 IPR035979 GO:0003676
Ahy8g2655 969 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2655 Ahy-Chr8 49806236 49814087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g2655 265 438 Eukaryotic Initiation Factors Gene Family AT3G16380 24.242 2.39e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g2655 - - aip:107612925 1649.8