Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2642 ATGAGGCCTGTTTTTGCTGGGAATTTGGAGTATGATACACGACAATCGGAGCTGGAGCGATTGTTCTCAAAGTATGGAAGAATTGACCGCGTTGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATTTTCCATTTGGCTATGAAAAGCGAAGGCTCTCTGTTGAATGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGCTCAAGGGCAAACCAGAAGCCGACAAAAACCCTATTTGTGATCAACTTTGACCCAATTCGTACTAGAGTTCGGGATATAGAAAAGCACTTTGAACCTTATGGGAAGGTTCTTCATGTTCGAATTCGTAGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACGAAAGCTCTTGAGTGTACGAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATGCACTGAGGGATGATGGTGATAGGGGTGACAATTATGACAGTCCGAGACGAGGTGGTTATGACAGATCACCGAGTCCGGCCTATCGCAGGCGGCCAAGTCCTGACTACGGTCATCCACGCAGCCCTGTGTATGATAGATATAATGGACCAGACAGGCGTAGGAGTCCTGATTACGGCAGGCAGAGGAGCCCAGATTATGGCAGGCACAGGAGTCCTGATTATGGCAGATACCGCAGCCGTTCACCAGTTCGAAGGTCAAGGACTTAG 744 0.4745 MRPVFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNFPFGYEKRRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGDRGDNYDSPRRGGYDRSPSPAYRRRPSPDYGHPRSPVYDRYNGPDRRRSPDYGRQRSPDYGRHRSPDYGRYRSRSPVRRSRT* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2642 247 MobiDBLite consensus disorder prediction 163 247 - -
Ahy8g2642 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Ahy8g2642 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Ahy8g2642 247 SUPERFAMILY RNA-binding domain, RBD 2 164 IPR035979 GO:0003676
Ahy8g2642 247 Gene3D - 84 170 IPR012677 -
Ahy8g2642 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Ahy8g2642 247 MobiDBLite consensus disorder prediction 204 239 - -
Ahy8g2642 247 Gene3D - 1 83 IPR012677 -
Ahy8g2642 247 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 215 - -
Ahy8g2642 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Ahy8g2642 247 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 215 IPR029537 GO:0000398|GO:0005681
Ahy8g2642 247 SMART rrm1_1 92 158 IPR000504 GO:0003723
Ahy8g2642 247 SMART rrm1_1 3 70 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2642 Ahy-Chr8 49648004 49650702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g2642 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 3.06e-09 55.1