Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2622 ATGGCTGATGGGGCTGGTGATGATTTGTTTAAAGAGCTATGGAGGTTGTGTGCAGGGCCATTAATGGATGTTCCTTGTGTTCAAGACAGAGTTTTCTATTTCCCTCAGGGTCACATTGAATTGTTGCCAGAACCTACAGAACAAGAATTGAGGCAGATGAAGAACCAGAAATCTCCCAAATACGATCTTCCTTCGAAGATTTTATGCCGTGTTATCGATGTTAAGTGTCTGGCCGAGATGGAAACCGACGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATCAGAATGATCCTCTAGATCCTAATCCAATTTGTTCCGAGAAACCGAAACAGAAATTTTACTCATTTTGTAAGACACTGAGTACCTCAGATACTAGCACACATGGAGGATTTTCGGTTCTTCGGAAGCACGCTAATGAATGCTTGCCTCAATTGGATATGACAATGGAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTGAATGGAAGTTTAAGCATATATACAGAGGACATCCGAAGAGGCACCTGCTTACAACTGGCTGGAGTGCATTCGTTGCGGCCAAGAAATTGGTTGCCGGAGATTCTTTTGTTTTTTTAAGGGGAGAGAATGGACAACTGAGAGTAGGCGTTAGGCGTTTGAATCCGCCACAGAGTCCTACACCTTCGTCCGTGGTGTCGACACAAAACATGCGCCTCGGAGTGATTGTTACTGCAAGCCATTCTGTTATGACTAGTACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTAGTTTAAACAAATATATTGACACAATGAACAATGACTTCAAAATCGGCATGCGATTCAAGATGAGACATGAGGGTGAAGATCCACTTGACAAAAGGTTTTGTGGTACTATAATTGGAGTTGGAGATGAATCTCGAGAATGGCCGAATTCTCAATGGAGGTCATTGAAGGTTCAATGGGATGAACCAGCAACAATGCAAAGACCAGATAGAGTTTCATGTTGGGAGATTGAACCTCTTGTTACTTCGCCTTTGAATACGATTCAACCGATGGCGAAGGGAAAAAGATCAAGGCATGCTGAGGCTTCATCTTCTGCTGCTTCAGGTAGCAAAGAAAGCCAAGTAGCTACAATATGGCAGCCACCACATTTGAATGGCAATGGAAATTCTTCTCAAGACCCCGAAAACAACAAAGCCGTCGTCCCGGCCGGTCCAGCTGGCGAAGGCCCGGCACGCGACCACAATGAAGACAGGAAGAAGGGCATGGATTGCTGGTTGTTTGGGGTGAATTTGACTAGCAGCTATAGTAATGTTGTTACCCCTTTGGAGAAAGAACTTTGGTGTGAAGCTTCAACTATCCTTCATTGTGGTCCCAAAGAATCTATTATTGTTGGTGCATGTGAGACTGAGAAGGTTCAGAGTCTCAATAACCATTCACTGTCCAACAAGCAGGGCCATGTACCATCCATGAGGACTAGGACTAAGGTGAAAATGGAAGGTGTAGCAGTTGGTCGTGCAATTGACTTGACCACATTAAATGGTTATGATGAACTCATAGTTGAGCTTGAGAAAATGTTTGACATTGAAGGAGAAATTATATCTCAGAAGAAATGGGCTGTTACTTTCACTGATGAAGAAAATGACCTTATGCTTCTTGGTGATGATTTATGGCAGGACTTCTGCAAAATGGTGAAGAGGATTTTCATTTGTTCAAAGGAGGATTAA 1743 0.4309 MADGAGDDLFKELWRLCAGPLMDVPCVQDRVFYFPQGHIELLPEPTEQELRQMKNQKSPKYDLPSKILCRVIDVKCLAEMETDEVYARITLQPSSDQNDPLDPNPICSEKPKQKFYSFCKTLSTSDTSTHGGFSVLRKHANECLPQLDMTMENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVAGDSFVFLRGENGQLRVGVRRLNPPQSPTPSSVVSTQNMRLGVIVTASHSVMTSTMFVVYYKPRTSQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIIGVGDESREWPNSQWRSLKVQWDEPATMQRPDRVSCWEIEPLVTSPLNTIQPMAKGKRSRHAEASSSAASGSKESQVATIWQPPHLNGNGNSSQDPENNKAVVPAGPAGEGPARDHNEDRKKGMDCWLFGVNLTSSYSNVVTPLEKELWCEASTILHCGPKESIIVGACETEKVQSLNNHSLSNKQGHVPSMRTRTKVKMEGVAVGRAIDLTTLNGYDELIVELEKMFDIEGEIISQKKWAVTFTDEENDLMLLGDDLWQDFCKMVKRIFICSKED* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2622 580 CDD B3_DNA 117 218 IPR003340 GO:0003677
Ahy8g2622 580 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Ahy8g2622 580 MobiDBLite consensus disorder prediction 367 403 - -
Ahy8g2622 580 Gene3D - 279 350 - -
Ahy8g2622 580 PANTHER AUXIN RESPONSE FACTOR 11 422 580 - -
Ahy8g2622 580 SMART B3_2 118 220 IPR003340 GO:0003677
Ahy8g2622 580 Pfam Auxin response factor 244 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy8g2622 580 SUPERFAMILY CAD & PB1 domains 491 573 - -
Ahy8g2622 580 Gene3D - 116 219 IPR015300 -
Ahy8g2622 580 ProSiteProfiles PB1 domain profile. 497 578 IPR000270 GO:0005515
Ahy8g2622 580 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 388 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy8g2622 580 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 422 580 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy8g2622 580 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Ahy8g2622 580 MobiDBLite consensus disorder prediction 352 423 - -
Ahy8g2622 580 Pfam AUX/IAA family 489 533 IPR033389 -
Ahy8g2622 580 Gene3D - 493 580 - -
Ahy8g2622 580 SUPERFAMILY DNA-binding pseudobarrel domain 106 245 IPR015300 -
Ahy8g2622 580 PANTHER AUXIN RESPONSE FACTOR 11 4 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2622 Ahy-Chr8 49399532 49404699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g2622 7 575 B3 DNA Binding Superfamily AT2G46530 51.890 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy8g2622 B3 8.20E-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g2622 K14486 - gmx:100795763 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2939 13 118553910 118558782 Ahy8g2622 8 49399532 49404699 PCT
Ahy8g2622 8 49399532 49404699 Ahy11g1581 11 75877681 75880202 PCT