LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g2535	ATGGCTTCCACCTCTTCTTCTTCATCAACATTATCATGCAAGTATCATGTGTTCCTGAGTTTCAGGGGTGAAGACACTCGCTCTGCATTCACTAGCCATCTCTATGCCGCTCTCACAAGGAAGGGAATCACTACCTTCATTGATGACACCAACCTTCGCAAAGGCGATGTTATTTCACATGAACTTCTCACAGCAATTGAAAACTCTATATTTGCAATTATTGTTCTTTCACCAAACTACGCTTCCTCCTCTTGGTGCTTAGACGAGCTCCAAAAGATCCTTGAATGCAAGCATAAGTTGGGGCAACACGTCGAAGCGGTGTTCTACGGTGTGGAGCCTTCTGATGTCAGGCACCAGAAAGGAACATTCGAAGAAGCTTTCAGGAAACATGAACACAGATTCGGACAAGAAAGTGACAAGGTTAGAAAATGGAGAGATGCGTTAACACAAGTTGCCGGTTACTCTGGTTGGACCTCAAAAAATCAGAATGAGGCAGCATTGGTGGAAAATATTTCTCAGAGTATACATAAAAAATTGATCCCAAACTTGCCATCTTCCATGAACAAGCTTGTAGGGATTGATTCAAGAGTGGAACAAGTGATTAGTCACATTGGTATTGGGCTGAATGATGTTCGTTATATCGGCATATGTGGGATGGGCGGCATAGGTAAGACAACTACTGCTAGAATAGTATATGAAGCCATCCAAAGTGAGTTTGAAGTTTCTTATTTTCTTGCAAATGTAAGGGAGACATGTGAGAAAAATGGTATTGTTCAAGCACAAAAAGAACTTGTTGGCCATATCAATGGAAGCTCGAGTAATTTGATAAATGAGCATGATGGGAGGAGAATAATTCGGGCTTCTTTGTGTCACAAAAAGGTTCTTCTTGTTCTTGATGATATAAATGAAGAAAAACAGTTGAAGAATTTGGCCGAGGAGCAAGACTGGTTTGGTTCTGGAAGCAGAATAATTATCACAACTAGAGACATGCATCTTCTAAAGATACATGATGCATATGAAATTTACAATGTTGAAGTGTTAGGGGAAAGTGAATCCTTTGATCTCTTTCATTTGAAGGCTTTTAAACAACGAAAGCCTGCAGAAGAGTATTTGGATTTGTCCAAACAGGCGGTCAAATATTGTGCTGGTCTTCCATTGGCACTTGAGGTGTTGGGTTCCCACCTTTGTGGTAGACCCGTTAAAGATTGGCATAGTGCTCTTGGAAAATTAAAGAGCATTCCACATGTCGACATTTTTGATACGTTGAAAATAAGTTATGATGGTTTAGATACCATGGACAAGGATATTTTTTTAGATATTGCTTATTTGTTCAAAGGACGTTCCAAAGATGGTGTAATAAAAATATTAGAATGGTGTGGTTATCATGCTGAAATTGGCATTTCTACTTTGATCGATAGATCTCTACTCACTATTAAGAATGGTATATTGGAGATGCATGATTTGGTTGAAAAAATGGGAAAACATATTGTAATTCAGGAGTCTCCAAATGATCCTAGCAAGCGTAGCAGGTTGCGGGGTTACGAGGACATCAATCCTGTTCTTACTCGAAACAAGGGAACTGAAGCAACTCATAGCATTGTTTTAGACAATATGAAGGTATATGAAGAACAAAATGAAGTCCATTGGAGAGATTTAACTTTTTCAAATATCTGTCAGCTAAAGCTCCTCATTTTAGATGGCGTGAAAGCTCCAATTCTTAGCTATATTCCTCCTTCATTGAGAGTTTTGAGTTGGATAGAGTGTCCAATGGAAACTCTGCCCTTTATGGATCATTACTATGAGCTTGTTGAAATTTCTGTGTCTTATAGCTCCAGCATTGTACAAGTATGGCATGGAAAAAAGTTTCTGGAAAAGCTGAAGTACTTATATCTGTCTTATTGCCATCGGCTGAAACAAATTCCAGATTTTTCTGAAGCTCCCAATCTTGAAATACTTCACGTTGAATGGTGTGGAGAACTGAATGATTTTCCCTCTTATCTTACATGCCACAAGAGCCTTGTTAAACTTATTTTATTTTGTTGCTCAAGTCTTGAAACTCTTGGGAGTAAATTGGAGATGAGTTCTCTCGAGGAACTAGATCTTAGTTTCTGCACAAGTATGAGGAAACTTGCAGAATTTGGAGAATGCATGAAACATTTATCAGTTCTTTCTTTGTCGGAAACAGCCATAGAAGAACTACCCACAACGGTTGGCTGTTTAGTTGGCCTAAAGGAGTTGCACTTAGACGGTTGCAAAAGGCTTACTTGCCTTCCAGACAGCATTCAAAAGTTAAAATCCCTTACCCTTTTGGATCTTTCTGGCTGCCCAAATGTCCTTCAGTCTTTGCATTTCCTGTCTAGTCTGACCTCATTGGATACTTTGGGATTATCGGGGTGTTTTGTCACATCCCAAGAGTCATGGTCTTTCGATCTTGGCAACTTAGCGTCTTTGACGGATTTAGATTTATCATATAATGATTTTATAAGGGTTCCAATAAATATCCATGAACTCCCCAGGCTTAGATGTTTGGATCTAGACTACTGCCCGAATCTGAAGGTTTTACCAGAGCTTCCGTCAAGTATAAGAGAGCTATATGCACGACATTCTGAATCACTGGATACATGGCATTGGAATGTGATATCAAAGGTGTGTTGTGGCTTTGCAGCATCAGCTAACCATCATTCTTATGGACTTTTGCAAATGTGGGTTGCACAGAAGCAAATAAAGATATTTGGGTTGACCATAGGGGAGGAAATTCCATTGTGGTTTGTCCATCAGGAAGAGGGTAATGGAGTAACAGTCACACTGCCACATAATGAAACCATGGCACTTGCTCTCTGTTTCCGGTTACGCCCAACAAATAGTCGTCCTAAATTTGGGCGAGATTTGTCGGTGATTTGCAACGGCAAGGAATTCATTAAACAAGAGCATTTAACTGCGGCGTGTGAAACTAAAAATTCTCAGCATTTCATCCTTTGCTTGACCAGTGACTATTTTGTTGACCAATTTTGCCAAGACTGTCGCTTTCAACTGGTATTGCCTTGGGACGTTAAAATGAAAGTAGAGAGTTGTGGGGCTCGGTGGGTGTGCAAGCAAGACATCCAAGATTTGAAGAAAAGTGGAACCCAAACATCAAAAAGAAAAGCAACTTTTGATCTCAACTTTTGA	3168	0.3977	MASTSSSSSTLSCKYHVFLSFRGEDTRSAFTSHLYAALTRKGITTFIDDTNLRKGDVISHELLTAIENSIFAIIVLSPNYASSSWCLDELQKILECKHKLGQHVEAVFYGVEPSDVRHQKGTFEEAFRKHEHRFGQESDKVRKWRDALTQVAGYSGWTSKNQNEAALVENISQSIHKKLIPNLPSSMNKLVGIDSRVEQVISHIGIGLNDVRYIGICGMGGIGKTTTARIVYEAIQSEFEVSYFLANVRETCEKNGIVQAQKELVGHINGSSSNLINEHDGRRIIRASLCHKKVLLVLDDINEEKQLKNLAEEQDWFGSGSRIIITTRDMHLLKIHDAYEIYNVEVLGESESFDLFHLKAFKQRKPAEEYLDLSKQAVKYCAGLPLALEVLGSHLCGRPVKDWHSALGKLKSIPHVDIFDTLKISYDGLDTMDKDIFLDIAYLFKGRSKDGVIKILEWCGYHAEIGISTLIDRSLLTIKNGILEMHDLVEKMGKHIVIQESPNDPSKRSRLRGYEDINPVLTRNKGTEATHSIVLDNMKVYEEQNEVHWRDLTFSNICQLKLLILDGVKAPILSYIPPSLRVLSWIECPMETLPFMDHYYELVEISVSYSSSIVQVWHGKKFLEKLKYLYLSYCHRLKQIPDFSEAPNLEILHVEWCGELNDFPSYLTCHKSLVKLILFCCSSLETLGSKLEMSSLEELDLSFCTSMRKLAEFGECMKHLSVLSLSETAIEELPTTVGCLVGLKELHLDGCKRLTCLPDSIQKLKSLTLLDLSGCPNVLQSLHFLSSLTSLDTLGLSGCFVTSQESWSFDLGNLASLTDLDLSYNDFIRVPINIHELPRLRCLDLDYCPNLKVLPELPSSIRELYARHSESLDTWHWNVISKVCCGFAASANHHSYGLLQMWVAQKQIKIFGLTIGEEIPLWFVHQEEGNGVTVTLPHNETMALALCFRLRPTNSRPKFGRDLSVICNGKEFIKQEHLTAACETKNSQHFILCLTSDYFVDQFCQDCRFQLVLPWDVKMKVESCGARWVCKQDIQDLKKSGTQTSKRKATFDLNF*	1056

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g2535	1055	PRINTS	Disease resistance protein signature	288	302	-	-
	Ahy8g2535	1055	PRINTS	Disease resistance protein signature	213	228	-	-
	Ahy8g2535	1055	PRINTS	Disease resistance protein signature	762	778	-	-
	Ahy8g2535	1055	PRINTS	Disease resistance protein signature	381	395	-	-
	Ahy8g2535	1055	Pfam	TIR domain	14	189	IPR000157	GO:0007165
	Ahy8g2535	1055	SMART	till_3	14	154	IPR000157	GO:0007165
	Ahy8g2535	1055	SUPERFAMILY	L domain-like	485	864	-	-
	Ahy8g2535	1055	Gene3D	-	179	342	IPR027417	-
	Ahy8g2535	1055	Pfam	C-JID domain	916	1034	IPR045344	-
	Ahy8g2535	1055	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	175	440	IPR027417	-
	Ahy8g2535	1055	Gene3D	-	12	178	IPR035897	-
	Ahy8g2535	1055	Pfam	NB-ARC domain	197	415	IPR002182	GO:0043531
	Ahy8g2535	1055	Gene3D	-	346	430	IPR042197	-
	Ahy8g2535	1055	ProSiteProfiles	TIR domain profile.	13	179	IPR000157	GO:0007165
	Ahy8g2535	1055	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	157	IPR035897	-
	Ahy8g2535	1055	Gene3D	Ribonuclease Inhibitor	714	885	IPR032675	-
	Ahy8g2535	1055	Gene3D	Ribonuclease Inhibitor	542	713	IPR032675	-
	Ahy8g2535	1055	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	10	922	IPR044974	GO:0006952
	Ahy8g2535	1055	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	10	922	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g2535	Ahy-Chr8	48178857	48183018	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy8g2535	15	775	WRKY Transcription Factor Family	AT4G12020	31.242	2.96e-90	316

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy8g2535	-		-	ahf:112769348	1643.63