Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2498 ATGTCTTCAAAGGGCAAGAGGAAGGAGGAGCATGACAACGCTTCTGATGGCGACTCTGAAGGCCATGCACCGCCCAAGAAAACCTCCAAAACCGCCACCACCACCAACGCCGATTCTGAGGACCCCGACTCAATCGTTGTCTGCGAGATTTCGAAGAACAGGAGGGTTTCGGTGAGGAACTGGCAGGGGAGAATTGTCGTCGACATTCGTGAGTTTTACGTCAAAGATGGCAAGCAACTCCCTGGAAAGAAAGGTATCTCGTTGACCATGGATCAGTGGAATGTGCTTCGTAACCACGTTGAAGAAATTGACAAGGCAGTTACTGAGAATTCCTGA 336 0.503 MSSKGKRKEEHDNASDGDSEGHAPPKKTSKTATTTNADSEDPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQLPGKKGISLTMDQWNVLRNHVEEIDKAVTENS* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2498 111 Pfam Transcriptional Coactivator p15 (PC4) 48 99 IPR003173 GO:0003677|GO:0006355
Ahy8g2498 111 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 1 109 IPR045125 GO:0003713|GO:0060261
Ahy8g2498 111 MobiDBLite consensus disorder prediction 26 41 - -
Ahy8g2498 111 PANTHER BNAC09G47220D PROTEIN 1 109 - -
Ahy8g2498 111 MobiDBLite consensus disorder prediction 1 25 - -
Ahy8g2498 111 Coils Coil 96 111 - -
Ahy8g2498 111 SUPERFAMILY ssDNA-binding transcriptional regulator domain 47 108 IPR009044 GO:0003677|GO:0006355
Ahy8g2498 111 MobiDBLite consensus disorder prediction 1 43 - -
Ahy8g2498 111 Gene3D Transcriptional Coactivator Pc4; Chain A 38 111 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2498 Ahy-Chr8 47779428 47782108 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Ahy8g2498 PC4 1.40E-25 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g2498 K25815 - gmx:100820368 156.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2761 18 131267929 131270095 Ahy8g2498 8 47779428 47782108 hybridization