Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2379 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTGTATATCCATGATTACCTGGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAGGGGAAAGTTTCCTCTGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATTTTTATTGCGAGGACTAATGAGAAGCACTCGGAGGTTGCAGCCTCTTATATTGAGACACAACTAATGAAGGCCAGGGAGCAACAGCAGCAGCAACCACAGCAGCCGCAACCGCAGCAGTCGCAGCATCAACAACAGCAGCAGCAGCAGCAACACATGCAGATGCAGCAGCTCCTATTGCAGCGGCATGTCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAGCAGCCGCAACAACCACAACAACAGCAGCCCCCACAACCACAACCGCAGCAGCAGCAGCAACCACCGCCACAACAACAGCAAGGTAGGGACAGGGCTAATCTCATAAACGGCAATACGAATGGGTTAGTTGGGAACCCGGGAACTGCCAATGCACTAGCAACAAAGATGTATGAGGAGAGGCTAAAGAGAGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGTGGCGAGAACATGGGTCAAATTTTGGATCCTAATCATGCCTCAATTTTGAAGTCAGCTGCTGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTACTGCGGCTGGCATGCCTCCACAAGTTCAAGCTCGTAGTCAGCAATTAGCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTACTGAACCCTAGAGCTGCGGGTGCTGAAGGATCATTGATGGGAATTCCTGGACCAAATCAAGGTAGTAACAATTTGACTTTGAAGGGATGGCCACTCACAGGTTTGGAGCAACTCCGCTCTGGTCTACTCCAGCAACAAAAGCCTTTCATGCAGGCTCCTCAGCCGTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGATAATGCTTGCGCAGCAAGGCTTGGCATCTCCATCTGCCAGTGATGACAATAGAAGACTCAGAATGCTGTTGAACAATAGGAGTATGAGCCTAAACAAGGATGGTCTTTCAAATCCTGTTGATGTAGTGCCAAATGTTGGATCTCCACTTCAAGGTGGCGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAATTGGCTCAAATGCAGCAGCAACATCAGCAACAGCCAAACAGCAATTCACAGCTGCAGCAACTTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGACTTCAAGCCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTTACTGCAGATGGTAGCATGTCGAACTCATTTAGGGGAAATGATCAGGCCTCGAAAAACCAGATTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTACAGGAACTGCTAATACAACAGGTCCATCACCAAGTTCGGCACCCTCGACTCCCTCGACTCATACACCCGGAGATGTGATATCTATGCCATCTATGACTGGTACTACTTCTTCAAAGCCATTAATGATGTTCAGCACTGACGGCACCGGGACTCTTACATCACCTTCAAACCAATTGGCTGATGTGGATCGCTTTGTGGAGGACGGATCTCTTGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACGGATCCTAGAGATACGGTCGGTCGTTGTATGGATGTAAGCAAAGGCTTCACGTTTTCTGATGTAAATTCTGTACGTGCTAGCACAAGCAAAGTTGTATGTTGTCATTTTTCATCTGATGGGAAATTACTTGCAAGCGGTGGGCACGACAAGAAGGCTGTTTTATGGCACACGGATACCTTGAAGCAGAAGGCCGTTCTTGAAGAGCATTCGTCTATGATCACTGATGTTCGTTTTAGTCCAAGCATGCCTCGTTTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGACATTGATAATCCTGGTTATTCGCTTCGCACCTTTACAGGACATTCAGCATCTGTAATGTCCCTAGATTTCCATCCAAATAAAGAGGATCTTATCTGCTCTTGTGATGGTGACGGCGAGATACGATATTGGAGCATAAATAATGGAAGTTGTGCAAGAGTCTTCAAGGGTGGCACCGCCCAGATGAGATTTCAACCACGTCTAGGGAGGTACCTGGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAGACACAAGGATGCCGATATTCATTAAAGGGCCATACGAAGCCGATACATTCCGTGTGTTGGGACCCTTCCGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCGGTCCGGGTTTGGACTCTAGGAACCGGGAGTGAAGGGGAATGTGTTCATGATCTTAGCAGTAATGGCAGTAAGTTTCAATCATGTGTCTTCCACCCGTCTTATCCGTCGTTGCTCGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGACGGAGAACAAGACGATGACTCTGACAGCTCACGAAGGTCTGATCGCCTCCCTCGCCGGTTCGACTGTAAATGGTTTGGTTGCTTCGGCGAGTCATGACAAGTTCATCAAGCTCTGGAAGTGA 2715 0.4777 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLMKAREQQQQQPQQPQPQQSQHQQQQQQQQHMQMQQLLLQRHVQQQQQQQQQQQQQQQQQQQQQQQPQQPQQQQPPQPQPQQQQQPPPQQQQGRDRANLINGNTNGLVGNPGTANALATKMYEERLKRDSLDEAAMKQRFGGENMGQILDPNHASILKSAAATGQPSGQVLHGATAAGMPPQVQARSQQLAGSTPDIKSEINPVLNPRAAGAEGSLMGIPGPNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQIMLAQQGLASPSASDDNRRLRMLLNNRSMSLNKDGLSNPVDVVPNVGSPLQGGGPPFPRGDTDMLMKLKLAQMQQQHQQQPNSNSQLQQLQQHALSNQQSQTSSHNMHQQDKVGGGGGSVTADGSMSNSFRGNDQASKNQIGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPSMTGTTSSKPLMMFSTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDTLKQKAVLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDIDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCARVFKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQGCRYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHDLSSNGSKFQSCVFHPSYPSLLVIGCYQSLELWNMTENKTMTLTAHEGLIASLAGSTVNGLVASASHDKFIKLWK* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2379 904 CDD WD40 620 904 - -
Ahy8g2379 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 787 827 IPR001680 GO:0005515
Ahy8g2379 904 Coils Coil 121 148 - -
Ahy8g2379 904 Pfam WD domain, G-beta repeat 867 904 IPR001680 GO:0005515
Ahy8g2379 904 Pfam WD domain, G-beta repeat 660 694 IPR001680 GO:0005515
Ahy8g2379 904 Pfam WD domain, G-beta repeat 701 738 IPR001680 GO:0005515
Ahy8g2379 904 Pfam WD domain, G-beta repeat 783 817 IPR001680 GO:0005515
Ahy8g2379 904 Pfam WD domain, G-beta repeat 622 651 IPR001680 GO:0005515
Ahy8g2379 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 662 697 - -
Ahy8g2379 904 MobiDBLite consensus disorder prediction 426 465 - -
Ahy8g2379 904 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 904 IPR044716 GO:0003714
Ahy8g2379 904 SUPERFAMILY WD40 repeat-like 618 904 IPR036322 GO:0005515
Ahy8g2379 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 620 661 IPR001680 GO:0005515
Ahy8g2379 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 872 904 - -
Ahy8g2379 904 SMART Lish 8 40 IPR006594 GO:0005515
Ahy8g2379 904 MobiDBLite consensus disorder prediction 153 167 - -
Ahy8g2379 904 MobiDBLite consensus disorder prediction 476 552 - -
Ahy8g2379 904 Gene3D - 751 904 IPR015943 GO:0005515
Ahy8g2379 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 705 747 IPR001680 GO:0005515
Ahy8g2379 904 MobiDBLite consensus disorder prediction 168 194 - -
Ahy8g2379 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 697 IPR001680 GO:0005515
Ahy8g2379 904 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 705 743 - -
Ahy8g2379 904 ProSiteProfiles Trp-Asp (WD) repeats profile. 872 904 IPR001680 GO:0005515
Ahy8g2379 904 SMART WD40_4 741 777 IPR001680 GO:0005515
Ahy8g2379 904 SMART WD40_4 698 738 IPR001680 GO:0005515
Ahy8g2379 904 SMART WD40_4 613 652 IPR001680 GO:0005515
Ahy8g2379 904 SMART WD40_4 655 694 IPR001680 GO:0005515
Ahy8g2379 904 SMART WD40_4 824 863 IPR001680 GO:0005515
Ahy8g2379 904 SMART WD40_4 780 818 IPR001680 GO:0005515
Ahy8g2379 904 SMART WD40_4 865 904 IPR001680 GO:0005515
Ahy8g2379 904 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Ahy8g2379 904 MobiDBLite consensus disorder prediction 143 194 - -
Ahy8g2379 904 Pfam LisH 10 36 IPR006594 GO:0005515
Ahy8g2379 904 MobiDBLite consensus disorder prediction 85 115 - -
Ahy8g2379 904 Gene3D - 599 750 IPR015943 GO:0005515
Ahy8g2379 904 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 904 - -
Ahy8g2379 904 MobiDBLite consensus disorder prediction 426 552 - -
Ahy8g2379 904 ProSitePatterns Trp-Asp (WD) repeats signature. 681 695 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2379 Ahy-Chr8 46270606 46278888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g2379 699 903 Miscellaneous Gene Families AT5G08390 25.714 2.42e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ahy8g2379 WD40 0.059 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g2379 - - gmx:100816263 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2605 18 128384093 128392496 Ahy8g2379 8 46270606 46278888 hybridization
Ahy16g3073 16 146271644 146281552 Ahy8g2379 8 46270606 46278888 PCT
Ahy6g2392 6 108037743 108046887 Ahy8g2379 8 46270606 46278888 PCT
Ahy8g2379 8 46270606 46278888 Ahy16g3073 16 146271644 146281552 PCT
Ahy8g2379 8 46270606 46278888 Ahy6g2392 6 108037743 108046887 PCT