Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2351 ATGAGTGAGAAAAGGGCCGTGGTGCTGCTGCATGCAGAAAAAGCGTTCGGTAAAGACAGATCGGAACAGAAGTGTCTGATGCAGTGGTTTGCATATGTTGTTATGGAGGAGGCGATAATAATGTACTCATCCGAGGGAAAAGTGTACAATCTGTCATCAAACACAGAAAGCATGCACGGAGAAGAATTGGTTCAATCAAAAGAACATGAAAAGATCAATGACTTGCAAGAGAGAAGATATATGAAATACGGATGTCAACATTATCGGAGAAGATGTCGTATTAGGGCCCCCTGCTGCAATGAGATTTTTCACTGTCGCCATTGTCATAATGAGGCAAAGGATGATATCAAGATTGATCCAAAGCTTAGACATGACCTTTCCCGTCATCAAATTAAACAGGTGATATGTTTACTTTGCGGGACTGAACAAGAGGTTCAGCAAAACTGCATTAGTTGTGGAGTTTGTATGGGGAAGTACTTTTGCGGGATATGCAAGCTTTTTGATGACGATGTATCTAAGAAACAATACCATTGCGGCGGCTGTGGAATTTGCAGAACTGGAGGATCTGAAAATTTCTTCCACTGCGACAAGTGTGGTTGTTGCCAGTCTACTCTGCTGAAAAATAGTCACGCTTGTGTGGAGAAGGCAATGCATCATGATTGTCCTGTTTGTTTTGAGTATTTGTTCGAATCGATGGATGAAATCGCTGTCTTGCCATGTGGACATACAATCCATATCAACTGTATGAATGAAATGAGAAAGCATTTACAGTATGCATGCCCTCTTTGCTCAAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAGAAGTTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACAATATCAAAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGTAGAAGTGGTAACGTAAAGTACCATGTTATTGCTCAAAAGTGCTTGAATTGCAACTCCTACAACACAAGACAAACTTGA 987 0.4083 MSEKRAVVLLHAEKAFGKDRSEQKCLMQWFAYVVMEEAIIMYSSEGKVYNLSSNTESMHGEELVQSKEHEKINDLQERRYMKYGCQHYRRRCRIRAPCCNEIFHCRHCHNEAKDDIKIDPKLRHDLSRHQIKQVICLLCGTEQEVQQNCISCGVCMGKYFCGICKLFDDDVSKKQYHCGGCGICRTGGSENFFHCDKCGCCQSTLLKNSHACVEKAMHHDCPVCFEYLFESMDEIAVLPCGHTIHINCMNEMRKHLQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEQYQNKMVWILCNDCGRSGNVKYHVIAQKCLNCNSYNTRQT* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2351 328 SUPERFAMILY RING/U-box 220 269 - -
Ahy8g2351 328 SMART ring_2 221 263 IPR001841 -
Ahy8g2351 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 266 IPR013083 -
Ahy8g2351 328 ProSiteProfiles Zinc finger RING-type profile. 221 264 IPR001841 -
Ahy8g2351 328 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 47 328 - -
Ahy8g2351 328 Pfam Zinc-ribbon 268 326 IPR039512 -
Ahy8g2351 328 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 47 328 - -
Ahy8g2351 328 Pfam CHY zinc finger 85 166 IPR008913 GO:0008270
Ahy8g2351 328 ProSiteProfiles Zinc finger CHY-type profile. 78 154 IPR008913 GO:0008270
Ahy8g2351 328 ProSiteProfiles Zinc finger CTCHY-type profile. 156 220 IPR017921 -
Ahy8g2351 328 Pfam Ring finger domain 220 263 IPR001841 -
Ahy8g2351 328 Gene3D - 292 328 - -
Ahy8g2351 328 SUPERFAMILY CHY zinc finger-like 82 156 IPR037274 GO:0008270
Ahy8g2351 328 SUPERFAMILY Zinc hairpin stack 157 214 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2351 Ahy-Chr8 45934849 45941477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g2351 83 326 C2H2 Transcription Factor Family AT3G18290 40.800 1.74e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g2351 K10144 - gmx:100803569 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2583 18 127910428 127916462 Ahy8g2351 8 45934849 45941477 hybridization
Ahy16g2924 16 143558147 143563830 Ahy8g2351 8 45934849 45941477 PCT