Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2300 ATGTCTCAAGGCTATTACTCAGAGTCATACCCTTCTTCTTCTTCTTCTTCTTCTTCTGATTCTGGATCTGATATTTCAGATGCTGCTGCTGCTTCAGCTGAACTGAAGCTCTATCGAGCATTCATTTTCTCAGCACCAATATTCTTCACTTTCATTCTTCTCTTCCTCTTTTATGTCTTCTATCTTCGACCCAGAAGGGTTGATTGGTCCTCCCTTAGGATGAGACCCTTTGCTTTTGCTCATGACTCCAACACCAACACCATCTCCACGTGGGATATTGGGTTGAAGAAAGAATTGAGAGAGATGCTGCCTATTATTGTGTATAAGGAAAGCTTCTCTGTCAAAGATACCCAATGCTCAGTGTGCCTTTTGGACTACCAAGCAGAGGATAAGCTTCAACAGATACCTGCATGTGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTGTCCAGCCACAGCACCTGCCCTCTCTGCCGCTTGTCCCTATTAGCATCGGCTAAATCTTCAACGGAGCCATCCCACACACAGGTTGATGGGCCACAGAGCAATGAGGAAACACAGACCATAGAATCATCAGAGTTGAGAGCTACTAGTCATGTAGAAACCACTGTTTCCCAGAATGTCTCAGGAGAGGTTGCAATTGCCGCTCACTGTATCGATGTTGAAGGACAACATGGACAAAACAATCAGTAG 699 0.4492 MSQGYYSESYPSSSSSSSSDSGSDISDAAAASAELKLYRAFIFSAPIFFTFILLFLFYVFYLRPRRVDWSSLRMRPFAFAHDSNTNTISTWDIGLKKELREMLPIIVYKESFSVKDTQCSVCLLDYQAEDKLQQIPACGHTFHMSCIDLWLSSHSTCPLCRLSLLASAKSSTEPSHTQVDGPQSNEETQTIESSELRATSHVETTVSQNVSGEVAIAAHCIDVEGQHGQNNQ* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2300 232 Pfam Ring finger domain 118 161 IPR001841 -
Ahy8g2300 232 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 7 192 - -
Ahy8g2300 232 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 7 192 - -
Ahy8g2300 232 MobiDBLite consensus disorder prediction 171 200 - -
Ahy8g2300 232 MobiDBLite consensus disorder prediction 1 21 - -
Ahy8g2300 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 166 IPR013083 -
Ahy8g2300 232 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Ahy8g2300 232 SMART ring_2 119 160 IPR001841 -
Ahy8g2300 232 CDD RING-H2_EL5_like 118 161 - -
Ahy8g2300 232 SUPERFAMILY RING/U-box 103 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2300 Ahy-Chr8 45249344 45252488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g2300 29 194 C3H Transcription Factor Family AT4G10150 59.763 2.91e-66 203