Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g2039 ATGCCCCTCCACCCTCATTACTTCCCTTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTTTATTTCTAATCAAAATTCCATTAATACTTCCCTCTTCTCATCACCATCGTATCCTCTCTATTTCTCAAACACCAGATTATTCTCCTTCCAATTGGAACCACCCTCTTCATCATCTTCTTCTCCTCCTCCTTCTTCCCCTCCTCTCATACAAGCCCTTCCTTTCATAAACACCAACAGCAGTGATCAAGAAGTAGTGGTGGACAAGATGAGAAAAGACAACAACAAAAAAGATGAAGAGAATCTTTTGGCTGATGATGATTATGATGATAACGAAGGTGTTGCCGTAGCGCTACGAATAGGGCTTCCTAATAGCGTGTCTGATAATACTTCCGGTATTGATGATCGGCAAAAGAAGAAGAAGATCTCATCAAACACAGAAGAAATTGTGGGAGAAAAAGATGAAGTGATGAGCGTGGTTTCTGAGCATCAGCCTTTGTTGTTAGAGAGATTGAACAATAACAAGACACAGTTTCAGTATTGGATTCCCACAGCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCATGCCCAGTCTGCTCCAAGACTTTCAACCGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTTCTGTTGTGCGCCAGGTTGCAAGCACAATATAGACCACCCAAGAGCGAGGCCTCTCAAGGACTTCAGAACCCTCCAAACGCATTACAAGCGAAAGCACGGCGTGAAACCCTACGCTTGCCGGAAATGTGGCAAGCCCTTCGCCGTGAAAGGCGATTGGCGGACGCATGAGAAGAACTGCGGCAGGATCTGGTATTGTTTGTGTGGGTCTGATTTCAAGCATAAGAGGTCCCTGAAGGATCATGTCAAAGCCTTTGGCCATGGACATGGTGCTTTTGGTATTGATTGCATGCAAGAGGAGGATGAAGCAGCTTCCGAAGTTGAACATGATGGTGATTGCTCCTTGTAG 1068 0.4485 MPLHPHYFPSSSSSSSSSSFISNQNSINTSLFSSPSYPLYFSNTRLFSFQLEPPSSSSSSPPPSSPPLIQALPFINTNSSDQEVVVDKMRKDNNKKDEENLLADDDYDDNEGVAVALRIGLPNSVSDNTSGIDDRQKKKKISSNTEEIVGEKDEVMSVVSEHQPLLLERLNNNKTQFQYWIPTASQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYACRKCGKPFAVKGDWRTHEKNCGRIWYCLCGSDFKHKRSLKDHVKAFGHGHGAFGIDCMQEEDEAASEVEHDGDCSL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g2039 355 MobiDBLite consensus disorder prediction 1 20 - -
Ahy8g2039 355 ProSitePatterns Zinc finger C2H2 type domain signature. 196 216 IPR013087 -
Ahy8g2039 355 SMART c2h2final6 278 298 IPR013087 -
Ahy8g2039 355 SMART c2h2final6 304 327 IPR013087 -
Ahy8g2039 355 SMART c2h2final6 194 216 IPR013087 -
Ahy8g2039 355 Pfam Zinc finger, C2H2 type 194 213 IPR013087 -
Ahy8g2039 355 Gene3D Classic Zinc Finger 193 216 - -
Ahy8g2039 355 SUPERFAMILY beta-beta-alpha zinc fingers 187 216 IPR036236 -
Ahy8g2039 355 PANTHER ZINC FINGER PROTEIN WIP2 18 349 IPR043584 GO:0003700|GO:0010468
Ahy8g2039 355 Gene3D Classic Zinc Finger 237 327 - -
Ahy8g2039 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 221 IPR013087 -
Ahy8g2039 355 MobiDBLite consensus disorder prediction 51 70 - -
Ahy8g2039 355 PANTHER ZINC FINGER PROTEIN WIP2 18 349 - -
Ahy8g2039 355 SUPERFAMILY beta-beta-alpha zinc fingers 263 298 IPR036236 -
Ahy8g2039 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 298 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g2039 Ahy-Chr8 40656099 40660965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g2039 113 348 C2H2 Transcription Factor Family AT3G57670 64.567 1.18e-117 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy8g2039 zf-C2H2 0.00062 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g2039 - - ahf:112707475 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g2115 18 113407849 113411894 Ahy8g2039 8 40656099 40660965 hybridization