Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1997 ATGGAGGCCAGGATGAGGAGAACAACAGTTGAGAAGATGAGGAAGGATAGCACAGTTGATGAGGTAGAAGAGGAGTTAGAAGAGGAAGATGAGAGTGGTGTTGGTGATGGTGTCCTTGCAGAAGAAGAGAAGAAGAAAAGTGCTGTTGGAAGTGGGAGAAGAGGATCAAATGGGGCAGGAGGAGTTTCTCCACCCTCCTGCCAGGCTGAGAGGTGTGGCGCCGACTTGACCGAGGCAAAAAGGTACCACCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTGGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAATTTGATGAAGCCAAAAGAAGCTGCCGCAGGCGCTTGGCCGGACACAATGAGAGACGCCGGAAGAGCAACATAGAGCCTTGCAACGAGGGAAGCGGCCGAGGCGGCAAAGGGCAACCCCCTAAGGAAAGCCACTGCAGAAACGCCGACGATCGGGGAAGAACTCAGATGAACATTTCAGGGAGCTCTGGCTACAAGTCCTTCCATATCAGATGA 570 0.5333 MEARMRRTTVEKMRKDSTVDEVEEELEEEDESGVGDGVLAEEEKKKSAVGSGRRGSNGAGGVSPPSCQAERCGADLTEAKRYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNIEPCNEGSGRGGKGQPPKESHCRNADDRGRTQMNISGSSGYKSFHIR* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1997 189 MobiDBLite consensus disorder prediction 1 20 - -
Ahy8g1997 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 189 IPR044817 GO:0003677
Ahy8g1997 189 Gene3D - 58 128 IPR036893 GO:0003677|GO:0005634
Ahy8g1997 189 Pfam SBP domain 67 140 IPR004333 GO:0003677
Ahy8g1997 189 MobiDBLite consensus disorder prediction 1 69 - -
Ahy8g1997 189 MobiDBLite consensus disorder prediction 21 36 - -
Ahy8g1997 189 Coils Coil 12 32 - -
Ahy8g1997 189 MobiDBLite consensus disorder prediction 132 189 - -
Ahy8g1997 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 189 - -
Ahy8g1997 189 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Ahy8g1997 189 SUPERFAMILY SBT domain 65 144 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1997 Ahy-Chr8 39924438 39925675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1997 52 154 SBP-box Gene Family AT1G53160 70.192 1.66e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy8g1997 SBP 1.00E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1997 - - aprc:113864686 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1382 18 26016464 26017843 Ahy8g1997 8 39924438 39925675 hybridization