Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1904 ATGGCCAAGTCTTGTTCTAGTGAAAAGAACAATAATAATGGATTGAAGAAGGGTCCATGGACTCCGGAGGAAGATCAAAAACTCATTGATTACATTCAGAAACATGGACATGGCAAGTGGCGAACCCTTCCTAAGAATGCAGGATTAAAGAGATGTGGAAAGAGTTGCCGGCTAAGGTGGGCTAATTACTTGAGGCCTGATATAAAGAGAGGAAGATTCTCATTTGAAGAAGAAGAAATTATCATCCAGTTACACACTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAATTTACCCGGAAGAACAGATAATGAGATTAAGAATTATTGGAACACTCACATCAAGAAGAAATTGTTGAAGATGGGGATTGATCCGATGACTCATACACCACGCCTTGATGTTTTTCAACTCTCTTCAATTCTAAGCTCAACCTTATACAATAACAATAATTCACCCCAAATTAATAATAATTATTACCCTACCCTCTTTGGTATTGGATCATCAAGTGTTGCAAATAATCCAAGCCAAGTCCTAAGTTTGCTCGCATCTCTTCTATCATATCAAAGCAGAAACAATGACAACATTTTAAATCAACAAAACCAACTTGGTACTATTAGCCCTCTATTATTGCAAAATCAAATGCACCTTAACCCTAGCCAAGCCTTCCAACCAAACCAACCTTGTGCTAATAATTTTCATGTGGAAACCCAAAACATGAAATCAAAATTAGAGCCTCAAATCCCTTCAACTTCTACCCCTTTTAGCCATCAAAATACATTACCAAATTTGTGGCACTATAATGGTGGCGGTTACATGGCTAATCAACAAGGTTTTCCTTCCTTGCTGGAAAATAATAATCAGATTTTGTGTAGTGAAGGGATTATGGCTAATTTCAATTTGATGAACTCAATGTTATCCTCTTCTACAGCTTCATCTTCTAGCCCCAGTAATTTGAATTCATCATCTTCAACAACATTTGTCAATGGGACAACAACCACCGAAGATGAAAGGGACAGTTATGGAAGCAACATGTTGATGTATAAATATAATATATCAAACGGATTGAATAACTCTGGACTTTTGTGA 1089 0.3691 MAKSCSSEKNNNNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEIIIQLHTVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPMTHTPRLDVFQLSSILSSTLYNNNNSPQINNNYYPTLFGIGSSSVANNPSQVLSLLASLLSYQSRNNDNILNQQNQLGTISPLLLQNQMHLNPSQAFQPNQPCANNFHVETQNMKSKLEPQIPSTSTPFSHQNTLPNLWHYNGGGYMANQQGFPSLLENNNQILCSEGIMANFNLMNSMLSSSTASSSSPSNLNSSSSTTFVNGTTTTEDERDSYGSNMLMYKYNISNGLNNSGLL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1904 362 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Ahy8g1904 362 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Ahy8g1904 362 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Ahy8g1904 362 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 348 - -
Ahy8g1904 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Ahy8g1904 362 MobiDBLite consensus disorder prediction 310 339 - -
Ahy8g1904 362 SMART sant 16 66 IPR001005 -
Ahy8g1904 362 SMART sant 69 117 IPR001005 -
Ahy8g1904 362 Gene3D - 72 119 - -
Ahy8g1904 362 CDD SANT 72 115 IPR001005 -
Ahy8g1904 362 CDD SANT 19 64 IPR001005 -
Ahy8g1904 362 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Ahy8g1904 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Ahy8g1904 362 MobiDBLite consensus disorder prediction 1 22 - -
Ahy8g1904 362 Gene3D - 16 69 - -
Ahy8g1904 362 MobiDBLite consensus disorder prediction 1 17 - -
Ahy8g1904 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 348 - -
Ahy8g1904 362 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1904 Ahy-Chr8 38127878 38129489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1904 1 362 MYB Transcription Factor Family AT4G21440 46.277 1.28e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy8g1904 Myb_DNA-binding 2.00E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1904 K09422 - gmx:100820398 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g1231 18 21059062 21060938 Ahy8g1904 8 38127878 38129489 hybridization