Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1670 ATGTTCTTATCATCTTGTTCTTTTCGCAGATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAGGATGTCCAGTGCCCAATTTGCCTTGGCATTATTAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTTGGGAACAATGAATGCCCTGCTTGCCGAACACATTGTGCCAGTCGCCGTTCTTTGAGAGATGATCCGAAATATGATGCTCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGGCAGTCTGAGGCACTAGTTAAGAGACGTAAAGATTCACCAAGTGTATTCGTGACAAGATCCCAGCGAAATCAACGAAATGCTTCTAGGAGACAAAATCAAGTGATTGATATTCAAGGATCTGAGGATAATGAGGAGGAAAATGACAATAACGAAAAGGACTCATCATCTGCTGATGAGCGGGGTACAGAGGCGAGGCAAAGAAGGAGAAAGAGATGGACCAGAGTTCGCACCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGATGTGCAGAAAGTGACTTGGATAACGGTAGAGAAAATCGAGGACTTTCAAGGCAGGTGTCAAAACCTCGAAAACTTACATGGGGAAGGGGTGGATTTAGAAGTCACACAAGGCATGGAAGTGGCGGTGGTAGTAGTAGCAAAACCTCTCGCAGTAGTCGAGTGTCTAAGATGGTTGATTTTCTCCGAAACTTGGATGAGAATGCTGATGAGCAGTTAGATATCCATCTCATGCTTTATTCTCTGGGCAAACGAGGCGCACCAAGTTTGGAGAAGCCACACCTTTGCTGTCGCCCAACTTTGTCTGTCAAGAACCTTTGCGAATATGTTGCTCGCCAAACACCTGTGCCTGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCAGTGGCACAGATTTCGACAAGTCAACTGATGAGACTTCATCCTTGAAATGTGATGAGCTAACAACTCTGGTTATAGATCCATCTAAATATGAACTAGAAATTTTGCAGGGAGATGAATCTTTAGCAGGGATTAGATCTAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAAGGGGCACTATAG 1218 0.4351 MFLSSCSFRRFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDSPSVFVTRSQRNQRNASRRQNQVIDIQGSEDNEEENDNNEKDSSSADERGTEARQRRRKRWTRVRTSQPSSSMASPDGGCAESDLDNGRENRGLSRQVSKPRKLTWGRGGFRSHTRHGSGGGSSSKTSRSSRVSKMVDFLRNLDENADEQLDIHLMLYSLGKRGAPSLEKPHLCCRPTLSVKNLCEYVARQTPVPVEEVEILAVKGCSGTDFDKSTDETSSLKCDELTTLVIDPSKYELEILQGDESLAGIRSKCISKREHLILAYRRKGAL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1670 405 Coils Coil 91 122 - -
Ahy8g1670 405 MobiDBLite consensus disorder prediction 138 160 - -
Ahy8g1670 405 CDD RING-HC_RING1_like 25 65 - -
Ahy8g1670 405 SUPERFAMILY RING/U-box 16 96 - -
Ahy8g1670 405 MobiDBLite consensus disorder prediction 123 265 - -
Ahy8g1670 405 Pfam Zinc finger, C3HC4 type (RING finger) 24 64 - -
Ahy8g1670 405 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Ahy8g1670 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 88 IPR013083 -
Ahy8g1670 405 MobiDBLite consensus disorder prediction 216 230 - -
Ahy8g1670 405 PANTHER OS11G0578200 PROTEIN 9 402 IPR044592 -
Ahy8g1670 405 SMART ring_2 25 64 IPR001841 -
Ahy8g1670 405 MobiDBLite consensus disorder prediction 250 265 - -
Ahy8g1670 405 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Ahy8g1670 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 9 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1670 Ahy-Chr8 34206914 34210407 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1670 18 88 C3H Transcription Factor Family AT3G23060 35.135 6.19e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1670 K10695 - gmx:100776547 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0918 18 11483582 11489192 Ahy8g1670 8 34206914 34210407 hybridization