Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1621 ATGGCAAGCACGTACAACAACCTCAAGGATATTGAGGCATCTTCAAACCACTTAATATTGAGGATTAAAGTGAGAGTCGTGAAAATATGGTCATTGTCTCCTGCTGAGCAAAAATACGTGAAGCCAACTTTAGAGTTAGTGGTCATGGATCACGTGGGCGATCGAATCCAGTGCACTATTAGGAATGCTCAGAGGAGGCTCTTTGAAGATGAGTTATCAGAGGGAAAAATCTATATCGTTTGTAACTTCTCAACTTCCTTGAATGACCAGAAATACAAGGCCACTAACCATGCATGTAGGATATACTTCAAGAGGGATACTCAACTTCAGATGGTCCATGATCCATCCTTTCCGGAGAATGTGTTTCGTTTTGTTCCTAACGATCTAATACTGAACCACACAAATGCTCAGTCGCATCTTATAGATGTTATTGGTCTACTTACTGGCAAGGGTGACATAATTGAATTTACTAAGAATGGCAAGAAGTGCAGCTACACTGTTCTCGAGCTTGATGACATGCAGGGAAAAGGCAAGATTAGGTGTACACTTTGGGAGGATTTTGCAACTATGTTGGTCAAGCACATTGAAGAGCAGCCAACATCAGAGTACATCATCATTGTACAGTTTGCTAAGTTCAACCTCTTTAAAGACTTCCAAGAGGTTAAGGATTTTCGCAAGAGCGTCGTCATGGCGGGGGTTCCACGTGCAAACCAACTATCCCAAATTGCTGTGGAGCCAGCGTACTCTATGGAGGATGATCTCATCAATGTCTCCATTTACAAACCCATTTCTGAACTCAAGGCATCCATTGAGAATGGTAGCTTCGTGACAATTGGAACTGTAATTGCAATTGACCCCAAGAACGGTTGGTGGTACAAAAGTTGTAAACATTGCTTTCATTCACTAAAGGAGGCTGAGGATTCCTACTATTGTGCCAAGTGTGCCACCTATCCAACGACTCACACACCCAGGTATAGCATTAATATAAAGGTTGCTGATGATACCGATACGGCTTCATTCCTTCTTTATGACAAGGAAGCGGCCAAATATCTTGGAATCTCTGCCTCTGACCTCAGGCTTGCACAACTAACTAGGGGTGGAGTAAATGAGGAATACCCAATAGAGCTGAATTCCTTTAGGGGTAAGAAATTCCTATTCAAGGTTTCTATCAAGATGGAAGATCTAAATTCTTTCCAGCCTTGCAAGGTCATTGTGATGAAGATGACTGATGAGATATCGCTTATAACAAAATTTTTAGGAAAGCATGATATATACCAGCAAAACCTTGCACTGGAACACTCAGAACTGTTGAACATGCAAACTGCTTCCACCGACACGCCAAAGTTAAAAATGCAGGGCACGGGTTCTCCTTCTGTTGAGGCGTTGGTGGAGAACTCTAACGATGCTTTCTCAACCCCCAAGAGAAACATTATTAGTGGTGGATGCTCTAAGCGACTCATTGATCTTTATCCAGACTCTGCTAATGGATCATCATCGAAGTGTAGAAAGCTCGAAGATGGCATTCCCGGAGTTGATAGAGTCTACCAAGATTAG 1554 0.4241 MASTYNNLKDIEASSNHLILRIKVRVVKIWSLSPAEQKYVKPTLELVVMDHVGDRIQCTIRNAQRRLFEDELSEGKIYIVCNFSTSLNDQKYKATNHACRIYFKRDTQLQMVHDPSFPENVFRFVPNDLILNHTNAQSHLIDVIGLLTGKGDIIEFTKNGKKCSYTVLELDDMQGKGKIRCTLWEDFATMLVKHIEEQPTSEYIIIVQFAKFNLFKDFQEVKDFRKSVVMAGVPRANQLSQIAVEPAYSMEDDLINVSIYKPISELKASIENGSFVTIGTVIAIDPKNGWWYKSCKHCFHSLKEAEDSYYCAKCATYPTTHTPRYSINIKVADDTDTASFLLYDKEAAKYLGISASDLRLAQLTRGGVNEEYPIELNSFRGKKFLFKVSIKMEDLNSFQPCKVIVMKMTDEISLITKFLGKHDIYQQNLALEHSELLNMQTASTDTPKLKMQGTGSPSVEALVENSNDAFSTPKRNIISGGCSKRLIDLYPDSANGSSSKCRKLEDGIPGVDRVYQD* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1621 517 CDD RPA1_DBD_A_like 21 107 - -
Ahy8g1621 517 Gene3D - 116 249 IPR012340 -
Ahy8g1621 517 SUPERFAMILY Nucleic acid-binding proteins 136 219 IPR012340 -
Ahy8g1621 517 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Ahy8g1621 517 Pfam Replication factor-A C terminal domain 277 409 IPR013955 -
Ahy8g1621 517 Gene3D - 6 114 IPR012340 -
Ahy8g1621 517 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Ahy8g1621 517 CDD RPA1_DBD_C 263 396 IPR013955 -
Ahy8g1621 517 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 20 401 - -
Ahy8g1621 517 PANTHER REPLICATION FACTOR A 1, RFA1 20 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy8g1621 517 SUPERFAMILY Nucleic acid-binding proteins 271 410 IPR012340 -
Ahy8g1621 517 Gene3D - 255 418 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1621 Ahy-Chr8 33385932 33390855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1621 48 405 Core DNA Replication Machinery Family AT5G08020 25.065 1.01e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1621 - - ahf:112707100 1030.01