Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1488 ATGGACATGATGGGAACCGAACGTGTTTGTTATGTTTACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGTAGCAGTTTGCTGACCATAGTGACAGTTAGATGTGGGCATTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCTCTTCAAGCATTGCCTCCTCAAGACCCTCACCATCATCAGAAGCAGCACCTGAGCTTCCAAGATCCAAGCAGCAAGGAACTGGGATCATCCTCATCAAGATGCAACAAGTTATCAGCAGCATTTGATCCTGTAGACCATGATCCCCAACCTAGGATCCCTCCCATTCGTCCTCCGGAAAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATCCAAAGAATTAAGGCTAGCAACCCAGACATAAGCCACAGGGAAGCTTTCAGCACAGCAGCCAAAAATTGGGCTCATTTCCCTCACATTCACTTTGGATTAAAGCTGGATGGAAACAAACAAGCAAAGTTGGACCAAGGGGAAGGGACTCAAAAGTCTAATGGATTCTACTGA 555 0.4595 MDMMGTERVCYVYCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQALPPQDPHHHQKQHLSFQDPSSKELGSSSSRCNKLSAAFDPVDHDPQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGEGTQKSNGFY* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1488 184 SUPERFAMILY HMG-box 106 154 IPR036910 -
Ahy8g1488 184 MobiDBLite consensus disorder prediction 72 89 - -
Ahy8g1488 184 MobiDBLite consensus disorder prediction 56 116 - -
Ahy8g1488 184 PANTHER AXIAL REGULATOR YABBY 2-RELATED 1 184 - -
Ahy8g1488 184 Pfam YABBY protein 6 161 IPR006780 GO:0007275
Ahy8g1488 184 Gene3D High mobility group box domain 106 173 IPR036910 -
Ahy8g1488 184 PANTHER PROTEIN YABBY 6-RELATED 1 184 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1488 Ahy-Chr8 31319458 31327376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1488 4 184 C2C2-YABBY Transcription Factor Family AT1G08465 65.591 2.10e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ahy8g1488 YABBY 7.00E-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1488 K25796 - gmx:100785458 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0692 18 7229907 7237782 Ahy8g1488 8 31319458 31327376 hybridization
Ahy8g1488 8 31319458 31327376 Ahy13g1353 13 16682459 16692205 PCT
Ahy13g1353 13 16682459 16692205 Ahy8g1488 8 31319458 31327376 PCT