Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1476 ATGGATAATGAAATTGAGGTTCCTGCACATTTTCTCTGCCCAATATCCCTTCAACTCATGAGAGACCCTGTAATCGTTTGCAGCGGTATCACTTACGACAGAGAGAACATAGAGAAATGGTTATTCTCATGCAAAAACAAAGCATGCCCGGTTACCAAACAGTCCCTAATACAACACACAGATCTTGATCTTGTTCTTACTCCAAACCACACCCTACGAAGGCTCATCCAATCATGGTGCACCGTAAACGCCTCTCTCGGAATCGAGCGTATCCCTACTCCAAAACCGTCCATGGACGCATCGTCTCACATCGCCAAACTCATCTCCGAAGCGAAGCGATTCCCGGAGGCTAAGGAGAACTGCCTCGCAACACTCAGATCCATGGCGTTCTTTGAAAGGAACAAGAGCTGTTTCCAGTCTTCAGGTGCAATAGAGTTCTTAGCTACAATCATGATGAACAACAACAATCGCGCAGAAGAAGAAGAACGAGTAGATCCAACTGAAACAGCGATTGAGATCTTGTTTCATCTTGATCTCTCGGAAAATCAGATCAAGAAGCTAATCAACAACGAGTGCCTTCAGTTTCTTGAATCGTTGCTGCAAGCGTTGAAGCGTGGGAGCTGCCAATCAAGAGCGTACGCAACACTTCTTTTGAAATCGGCATTTGCGGTTTCAAATCCGATCCAGTTAATCAGCGCGAAAACCGAAATGCTGTTTGAAATCACGAGAGTGATACGCGATCGTATATCGCAGCAGGCTCATAAGGCGGCATTGAAGCTGGTGGTTGAGCTCTGTCCATGGGGAAGAAACAGAATCAAAGCGGTGGAAGCCGGCGCGGTGTCCGTGCTCGTGGAAGTGCTTCTTGATTCGACGGAAAGAAGAACGTGTGAGCTGGCGTTAATGGCGTTGGATCAGCTTTGCGGTTGCGCGGAAGGGCGCGCGGAGTTGGTGAAGCACGGCGCGGGAATCGCCGTGGTTTCGAAGAAAATATTGAGAGTTTCACGCGCCGCGAGTGACAGAGGAGTTAGGATATTAGCGTCGGTTTGTAGGTTCTGTGGAAGCGGGAGAGTGGTTCAAGAGATGATGCAGGTTGGAGCCGTTAACAAGCTGTGTTTGGTGCTTCAAGTTGATAGCGCTTTGAAGACCAAAGAGAGGGCTAAAGAGTCTCTCAAGTTGCATTCTCTGGTTTGGAAGAATTCAACATGTATTCCTCTACCTTTGTTATCATCGTATCCATGA 1239 0.4778 MDNEIEVPAHFLCPISLQLMRDPVIVCSGITYDRENIEKWLFSCKNKACPVTKQSLIQHTDLDLVLTPNHTLRRLIQSWCTVNASLGIERIPTPKPSMDASSHIAKLISEAKRFPEAKENCLATLRSMAFFERNKSCFQSSGAIEFLATIMMNNNNRAEEEERVDPTETAIEILFHLDLSENQIKKLINNECLQFLESLLQALKRGSCQSRAYATLLLKSAFAVSNPIQLISAKTEMLFEITRVIRDRISQQAHKAALKLVVELCPWGRNRIKAVEAGAVSVLVEVLLDSTERRTCELALMALDQLCGCAEGRAELVKHGAGIAVVSKKILRVSRAASDRGVRILASVCRFCGSGRVVQEMMQVGAVNKLCLVLQVDSALKTKERAKESLKLHSLVWKNSTCIPLPLLSSYP* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1476 412 PANTHER WDSAM1 PROTEIN 6 412 IPR045185 GO:0061630
Ahy8g1476 412 SUPERFAMILY RING/U-box 5 84 - -
Ahy8g1476 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Ahy8g1476 412 CDD RING-Ubox_PUB 11 54 IPR045210 -
Ahy8g1476 412 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Ahy8g1476 412 PANTHER OS11G0573500 PROTEIN 6 412 - -
Ahy8g1476 412 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Ahy8g1476 412 SUPERFAMILY ARM repeat 114 222 IPR016024 -
Ahy8g1476 412 Gene3D - 96 399 IPR011989 -
Ahy8g1476 412 ProSiteProfiles Leucine-rich repeat profile. 173 194 IPR001611 GO:0005515
Ahy8g1476 412 SUPERFAMILY ARM repeat 196 377 IPR016024 -
Ahy8g1476 412 Pfam U-box domain 7 82 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1476 Ahy-Chr8 31143490 31145276 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1476 1 412 U-box Gene Family AT2G35930 52.518 1.32e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1476 - - gmx:100778012 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0680 18 7038080 7039878 Ahy8g1476 8 31143490 31145276 hybridization
Ahy8g1476 8 31143490 31145276 Ahy13g1335 13 16293596 16295152 PCT
Ahy13g1335 13 16293596 16295152 Ahy8g1476 8 31143490 31145276 PCT