LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g1461	ATGTTTCTCAGCAATAATTTTTGTAGCTGGAGAGAGGTACCAATGGGGTCTCGCATGGATCAGTACGAGATCATGGAGCAGATCGGCAGAGGAGCATTTGGAGCTGCAATTCTCGTTCATCACAAGACAGAGAAGAAAAAATATGTGTTGAAGAAAATAAGGCTTGCTAGGCAGACTGAAAGGTGCAGAAGAGCTGCACATCAAGAGATGGTTCTTATTGCTCGAATTCGGCACCCGTACATTGTGGAATTCAAAGAGGCTTGGGTTGAGAAGGGTTGCTTTGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAAACGGGGTATACTTTCCGGAGGAGAAACTCTGCAAGTGGTTTGCACAATTACTCTTAGCGGTGGAATATCTGCATTCCAATTATGTATTACATCGTGACTTAAAGTGTTCAAACATTTTTCTTACCAAGGATCAGGATGTTCGCTTAGGGGATTTTGGGCTTGCCAAGACACTAAAAGCAGATGATTTGGCATCTTCGGTGGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTGCAGATATTCCTTACGGATTCAAATCTGATATTTGGTCATTAGGGTGTTGTATATATGAAATGGCTGCTCATCGCCCTGCATTTAAAGCTTTTGATATGGCAGGATTGATAAGTAAGGTGAACCGTACCGCAATCGGCCCATTGCCTTCCTGTTATTCCCCATCTTTGAAAATGCTAATAAAGTGCATGCTGCGAAAAAATCCCGAGCATCGTTTATCAGCATCTGAGATCTTAAAACACCCCTATCTGCAACCTTATGTTGATCAATATCGTCCGTCTTTTTGTCCGCCTACAACCTGTTCTCCTCAAAAGTCTATTGGAGTTTTCCATGATCCTCGAAGAAATAGGCCTGAAAGCCAAAACAATAATAGCTCAAGCAGTGACAAAGATTGTTTGATATCAAATGAGAGAAACATGGAAATGGCAGAGCCAAATTTTGGTAGAGAAACCACAATTCAGGCATTAGTTGTTGATGATGGCTCTGAGTATCCCCTGCCCAGTGAAGAAGGAAATGGTTCCAGCAATGCTAAAACAGTAAAGGTGGTGAAGCCATCTCATAATGAAAACCATCCAAATATTGCATCTAAGGAACAAAACCTTTTCAAGAATACAATGATTGCTTTAAAAGACAGAAGAGTTAGAGAATCAAGTTCTCCAATGAGAGGCAATCACATAAAGGCTGGCAATGTATCCATCCAAAAAATAAATACAGAGATACCTTCCAAATTGCCCAAACCTAGTTTTGGTTTGAGGCCTAATTTAGAGGCACCAACTATTGCACCTGCAAAAGCAACCTTTGATTCTGCAAAGGGATCACATAGTTTAAAGTATCAGTTACCGATGACAGAATCATTGCCGAAAACCAGACCTCGAGATATTGTGACTCTGCCATCCGGCCGAACCAAACAAACAGTTGGAAATGGAGTTCCTGCCAAGCCAAGGCAAATGACTCCTCCAAGATCACTCAGACCACCTTCATCTCCAGTTCGTATGAGGCAGGCCAGGCTTGATTTTCCAAACATAGTGAATGATATAAGAAACTCGAATCCAGTGGTTCATGAGCCTAAGATAAGCCATCATAGGTTGACTAACAGTCATATACCACGTGTTTCGAGAGATATTAGGAAAGAGCCTCGGAAGTATTCTGAACATTGCTCAAAAGGAATGCAAACAGACAGCAGCAATTCAGTCTCATCTTCGGTGTCTATTCAAGGATTTGAACTTTGTGATGATGCAACTACTTTTATGGACTTGAGTGAACTCACACTTGCTGATCATGAGAGTATAAACCACATTGAGAATGTGGAATCACATCTAAATAGCAACTTGCCTCTTACGCATTCCGAGACATCTGAAGATGTGTCTTGGGAATCTGCAAGGCTTCCACGGAGCTTCCATAATAGCAATACAAGCAATGAGAATCTAAGTTCCACTTTATCTCAGGATCACTCAGTTCAAGATCATAAGGGAATTTTCGCTTCTGATGATGGTTGTCCCATAAATCGGACAACCATATCTGCTGCCTCAGGTTGTGGTAGAAAATCTCTACAGCCCTCTGCTTCAGCTGCAAAAGAATCAAAAGAGCTTCAAGACATTTCTGTGGAAACTACTTCAGCTAAGTCTCTGAAGCATCCAATTCCCATTTCTGAAGAGAAGTCTTCTTGTGAAGAAAGCACACCGGATAATAGGCCTGATAAAGATAGCCAACCAAAACTTATGATCACCCCAAGTGGTGATGAAGAATCCAAGGTAACCAAAAGATTGTCATCAGTGGCTGAAACAGATCCTCTGATAGTCTCCACTAAAATTCCAAGCCAGGACATTTTGCAAGAAGAGAAAGGAGCAGTTTTACAGAACACATCAGCTGAAATTTCATCTGCTGATCAACTTCCTCCAGCTTATGGTGATGTCATCCATGTTATACGGCATAGTAGTTATCGTGTCGGGAGTGAGCAGCCGGTGAAGGAATCTGTAGAAGTGGGAGTTCAAAATGTTGATGTTGGCAAGTTCATCAGCATTGTAAAGGATGATGCAGAGATGAGAAATGTAAGCACTCCTTTGGCCCTTAATTCTTCAGATTCTTCTGATCATTTAGAATCTCCAAGTTGCCCTGGCACGTTGAGTTTGGAATCAAGTACTCTTGACCAACCTACCATTAAGGATCAAGATTTGAAAAGCCCTGATTCTACAGTATCAAAATCTGATTCCACTAAATATGAGACTATTACAGTCAAAGATGAAACACAGGCAAAGGAAATTTTGGATGTGAAATCTTCAAGACAGAGAGCTGAGGCACTTGAAGGGCTCTTAGAACTTTCTGCAGACTTGCTGGAGCAGAACAAATTGGAGGAACTTTCAGTTGTTTTGAAGCCATTTGGAAAAGATAAGGTATCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTAATGATTGAGGATAGTGTGGGAAGAGCTTCATGA	3051	0.4156	MFLSNNFCSWREVPMGSRMDQYEIMEQIGRGAFGAAILVHHKTEKKKYVLKKIRLARQTERCRRAAHQEMVLIARIRHPYIVEFKEAWVEKGCFVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFAQLLLAVEYLHSNYVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKVNRTAIGPLPSCYSPSLKMLIKCMLRKNPEHRLSASEILKHPYLQPYVDQYRPSFCPPTTCSPQKSIGVFHDPRRNRPESQNNNSSSSDKDCLISNERNMEMAEPNFGRETTIQALVVDDGSEYPLPSEEGNGSSNAKTVKVVKPSHNENHPNIASKEQNLFKNTMIALKDRRVRESSSPMRGNHIKAGNVSIQKINTEIPSKLPKPSFGLRPNLEAPTIAPAKATFDSAKGSHSLKYQLPMTESLPKTRPRDIVTLPSGRTKQTVGNGVPAKPRQMTPPRSLRPPSSPVRMRQARLDFPNIVNDIRNSNPVVHEPKISHHRLTNSHIPRVSRDIRKEPRKYSEHCSKGMQTDSSNSVSSSVSIQGFELCDDATTFMDLSELTLADHESINHIENVESHLNSNLPLTHSETSEDVSWESARLPRSFHNSNTSNENLSSTLSQDHSVQDHKGIFASDDGCPINRTTISAASGCGRKSLQPSASAAKESKELQDISVETTSAKSLKHPIPISEEKSSCEESTPDNRPDKDSQPKLMITPSGDEESKVTKRLSSVAETDPLIVSTKIPSQDILQEEKGAVLQNTSAEISSADQLPPAYGDVIHVIRHSSYRVGSEQPVKESVEVGVQNVDVGKFISIVKDDAEMRNVSTPLALNSSDSSDHLESPSCPGTLSLESSTLDQPTIKDQDLKSPDSTVSKSDSTKYETITVKDETQAKEILDVKSSRQRAEALEGLLELSADLLEQNKLEELSVVLKPFGKDKVSPRETAIWLAKSLKGLMIEDSVGRAS*	1017

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g1461	1016	MobiDBLite	consensus disorder prediction	703	736	-	-
	Ahy8g1461	1016	SUPERFAMILY	Protein kinase-like (PK-like)	18	321	IPR011009	-
	Ahy8g1461	1016	MobiDBLite	consensus disorder prediction	738	761	-	-
	Ahy8g1461	1016	MobiDBLite	consensus disorder prediction	703	783	-	-
	Ahy8g1461	1016	ProSiteProfiles	Protein kinase domain profile.	22	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy8g1461	1016	MobiDBLite	consensus disorder prediction	482	523	-	-
	Ahy8g1461	1016	Gene3D	Transferase(Phosphotransferase) domain 1	104	348	-	-
	Ahy8g1461	1016	Pfam	Protein kinase domain	22	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy8g1461	1016	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE	15	999	-	-
	Ahy8g1461	1016	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	143	155	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g1461	Ahy-Chr8	30962343	30968666	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy8g1461	26	287	MAP Kinase Kinase Kinase	AT3G06030	33.692	5.88e-37	147

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Ahy8g1461		Pkinase	7.50E-65	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy8g1461	K08857		-	gmx:100780141	1213.36

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy18g0658	18	6760394	6766646	Ahy8g1461	8	30962343	30968666	hybridization
	Ahy8g1461	8	30962343	30968666	Ahy13g1324	13	15817930	15824932	PCT
	Ahy13g1324	13	15817930	15824932	Ahy8g1461	8	30962343	30968666	PCT

Showing 1 to 3 of 3 entries