Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1456 ATGAAGCGCCAGGTGCCCCTCCCTTCCACCAAACCGCCTTTTGCTCCCCCCGCAGACTACCATCGCTTCGCCACCGACCACCGCACAACTTCTCAGAACGACGCCGACGCCATTGCCGTTAAAACTCCTCAATTAAAGCGGAAGAGTGTTACAACTGATCTTGAAGGTGATTCTGGTAATGTGACTCCAGCATCCACTGAAGCAGTTAATAGTCCTTTCCGGACACCTATCTCGAGGAAGACGGGAAAGGCAAGCAAATCCTCTCGACTTACAAAATGCAACAGATCAGGATCTCAAATCCCTGGATCAAATATCAGTTCACCATCAGCAAATAATCTCGCACCTTCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGAGACATTAGAGGTACAAAAGAGGAGGATATATGATATAACGAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTAAAGAACAGAATTCAATGGAAGGGACTGGATGTTTCAAGACCAGGGCAGGCTGTTGATAGTTTTGCTAGTTTACAGGCTGAAGTAGAAAATCTTACAAATGAGGAGCACCGGTTAGATGAGCAAATAAGAGAGATGCAAGAAAGATTAAGAGGTCTTAGTGAAGACGAAAACACTCAAAGGTATCTTTTTGTCACCGAGGAAGATATAAAGAGTTTGCCCTCGTCTCAGAATGAAACCTTGATAGCAATTAAAGCTCCATATTGCACCACTTTGGAGGTCCCTGATCCTGATGAGGTTGTTGATTATCCTCAGAGGAAATACAGGATTATCCTGAGAAGCACAACGGGCCCAATAGACGTTTATCTTCTTAGTCAATTTGAAGAGAAATTTGAGATTAATGGTGTTAATGTGGCCCCAAATATTCCATCAAGACCAGATTTCAATAAGCACCAATCAACAGTGGTCTCAAATGATAGAGGCAAGGACCTTGAAATGGGGATACAAGATGTATATAGGCCTTCAGATTTATCTAATTCACATGATTTTGCGGGTGGGATCACGAAGATTGTTCCTTCAGATTTTGAGAGTGACGCTGATTACTGGCTTTTATCGGATGCCGATGTTAGCATAACAGACATGTGGAGGACAGAACCCGGCGAAGTTGAATGGCATAATCTGGATACTCCAAAAGAAGATTATTGTATGACTCATGTGAGCCCACCACCTCCCCAAACCCCTCCCTCAAACATAAGTGAAGCACCTTCGGCATCTAACCCTCCTGTAGCTTGA 1320 0.4326 MKRQVPLPSTKPPFAPPADYHRFATDHRTTSQNDADAIAVKTPQLKRKSVTTDLEGDSGNVTPASTEAVNSPFRTPISRKTGKASKSSRLTKCNRSGSQIPGSNISSPSANNLAPSGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQAVDSFASLQAEVENLTNEEHRLDEQIREMQERLRGLSEDENTQRYLFVTEEDIKSLPSSQNETLIAIKAPYCTTLEVPDPDEVVDYPQRKYRIILRSTTGPIDVYLLSQFEEKFEINGVNVAPNIPSRPDFNKHQSTVVSNDRGKDLEMGIQDVYRPSDLSNSHDFAGGITKIVPSDFESDADYWLLSDADVSITDMWRTEPGEVEWHNLDTPKEDYCMTHVSPPPPQTPPSNISEAPSASNPPVA* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1456 439 Gene3D - 114 187 IPR036388 -
Ahy8g1456 439 Pfam E2F/DP family winged-helix DNA-binding domain 122 185 IPR003316 GO:0005667|GO:0006355
Ahy8g1456 439 CDD E2F_DD 196 302 IPR032198 GO:0046983
Ahy8g1456 439 MobiDBLite consensus disorder prediction 1 112 - -
Ahy8g1456 439 Pfam E2F transcription factor CC-MB domain 201 300 IPR032198 GO:0046983
Ahy8g1456 439 PANTHER TRANSCRIPTION FACTOR E2F 2 435 IPR015633 GO:0000978|GO:0006357
Ahy8g1456 439 MobiDBLite consensus disorder prediction 413 439 - -
Ahy8g1456 439 SMART E2F_TDP_2 120 185 IPR003316 GO:0005667|GO:0006355
Ahy8g1456 439 SUPERFAMILY E2F-DP heterodimerization region 199 301 IPR037241 -
Ahy8g1456 439 MobiDBLite consensus disorder prediction 54 112 - -
Ahy8g1456 439 Coils Coil 198 232 - -
Ahy8g1456 439 Coils Coil 136 156 - -
Ahy8g1456 439 SUPERFAMILY "Winged helix" DNA-binding domain 120 183 IPR036390 -
Ahy8g1456 439 PANTHER TRANSCRIPTION FACTOR E2FB 2 435 - -
Ahy8g1456 439 Gene3D - 194 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1456 Ahy-Chr8 30899722 30904094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1456 2 439 E2F-DP Transcription Factor Family AT5G22220 53.503 3.63e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ahy8g1456 E2F_CC-MB 1.10E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1456 K06620 - gmx:100819817 614.764