Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1420 ATGGGTTTGAGGGAAAACACCAACAACAACCACAACAACAAGAATTTATACCGTCACAATAATAATAACAACCCAACTTTCATTGAGTGGCTCAAACCATCTTCATCTCTAACTAGTTCACTATTTTTATCATCACAAACTCCACCTCCCTGTGTGACTGATGAACACCGAGAAACTATAGAGTTTTTTCCCATTTTGAAGGCTTCAGAGGGAGAGCATGGAGTGGGGAACAATCATCATCATCATCAGAAGGAAGAAGAAGAAGAAGAAGGTATTGAGGTGAAAGAAGAGAAGGTGGAACAACAACAACAGTTGATGACTGTGGCTTTGCACATTGGATTACCAACAAACAACACAGTAGGAGTTGTTGCTCCTGATGATGATGAGAAAAAGAAGGTTTTGCATGTTAAGGAGGAGGAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAGTTATTGGAGAGAAGATTATTGGAGAATTGGTGGTTAAAGCAGGAAGAGAATAAGAGGTTTTGGATACCAAGTCCTTCACAAATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATTTGCAACAAAACTTTCAACAGATATAACAATATGCAGATGCATATGTGGGGGCATGGTTCGGAATTCAGGAAAGGGCCAGACTCACTGAGAGGAACACAACCTGCGGCAATGCTAAGGCTACCATGTTATTGTTGTGCACAAGGTTGCAAGAACAACATCAACCATCCAAGGGCAAAGCCATTGAAGGATTTCAGAACTCTGCAAACACACTACAAGAGAAAGCATGGCACCAAGCCCTTCATGTGTAGAAAGTGTGGCAAAACCTTTGCTGTTAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGTAAGCTTTGGTATTGCACTTGTGGTTCCGATTTCAAGCATAAGAGGTCCCTTAAGGATCACATTAGATCCTTTGGTAAGGGTCACTCTCCTCATCCTTCTCTTGAAGGTTTTGAGGATGAGAAGGAATGCATTACCACTGGCTCTGATGAGGATGAACCTAAGTAG 1050 0.4143 MGLRENTNNNHNNKNLYRHNNNNNPTFIEWLKPSSSLTSSLFLSSQTPPPCVTDEHRETIEFFPILKASEGEHGVGNNHHHHQKEEEEEEGIEVKEEKVEQQQQLMTVALHIGLPTNNTVGVVAPDDDEKKKVLHVKEEEEKEKEEEEEEEEKLLERRLLENWWLKQEENKRFWIPSPSQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFEDEKECITTGSDEDEPK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1420 349 Coils Coil 82 105 - -
Ahy8g1420 349 MobiDBLite consensus disorder prediction 1 20 - -
Ahy8g1420 349 SUPERFAMILY beta-beta-alpha zinc fingers 258 292 IPR036236 -
Ahy8g1420 349 Coils Coil 130 162 - -
Ahy8g1420 349 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 20 346 - -
Ahy8g1420 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 272 292 IPR013087 -
Ahy8g1420 349 MobiDBLite consensus disorder prediction 318 349 - -
Ahy8g1420 349 Gene3D Classic Zinc Finger 187 210 - -
Ahy8g1420 349 MobiDBLite consensus disorder prediction 72 91 - -
Ahy8g1420 349 Gene3D Classic Zinc Finger 250 328 - -
Ahy8g1420 349 MobiDBLite consensus disorder prediction 73 91 - -
Ahy8g1420 349 SMART c2h2final6 272 292 IPR013087 -
Ahy8g1420 349 SMART c2h2final6 188 210 IPR013087 -
Ahy8g1420 349 SMART c2h2final6 235 267 IPR013087 -
Ahy8g1420 349 ProSitePatterns Zinc finger C2H2 type domain signature. 190 210 IPR013087 -
Ahy8g1420 349 SUPERFAMILY beta-beta-alpha zinc fingers 167 211 IPR036236 -
Ahy8g1420 349 PANTHER ZINC FINGER PROTEIN WIP2 20 346 IPR043584 GO:0003700|GO:0010468
Ahy8g1420 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 215 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1420 Ahy-Chr8 30492731 30496790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1420 24 341 C2H2 Transcription Factor Family AT1G08290 51.734 1.46e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy8g1420 zf-C2H2_6 0.00011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1420 - - ahf:112706908 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0617 18 6297682 6302217 Ahy8g1420 8 30492731 30496790 hybridization