LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g1417	ATGTATAGCAATTTCAAGGAGCAAGCAATAGAGTACGTGAAACAAGCGGTGCAAGAAGACAATGCCGGAAACTACGCCAAAGCGTTCCCTTTGTACATGAACGCCTTGGAGTACTTCAAGACCCACCTCAAGTACGAGAAGAACCCTAAGATCAGAGAAGCAATTACCCAGAAGTTCACCGAGTACCTTCGTCGTGCTGAGGAGATCCGTGCCGTCCTCGACGACGGTGGCCCCGGCCCGGGGGCATCCAACGGGGATGCTGCAGTTGCCGCTAGGCCCAAGACCAAGCCCAAGGGCGGGGAAGGTGGTGGTGGGGATGGGGAAGACCCGGAGCAGGCGAAGCTGCGGGCCGGGCTGAACTCCGCGATCATAAGAGAGAAGCCCAACGTGAAGTGGAATGATGTCGCGGGGTTGGAGAGTGCCAAGCAGGCTTTGCAGGAGGCTGTGATTTTGCCTGTCAAGTTCCCTCAGTTCTTTACGGGTAAAAGACGACCATGGCGAGCATTTTTGTTGTATGGACCACCTGGAACAGGTAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCCACATTTTTCAGTATTTCTTCATCAGACCTTGTCTCAAAGTGGATGGGTGAAAGTGAAAAGTTGGTTTCAAGCCTTTTCCAAATGGCCCGAGAAAGTGCTCCTTCTATAATATTTATCGATGAAATAGATTCCCTTTGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGAATTAAAACAGAACTTCTGGTCCAAATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCGACAAATACACCCTATGCTTTAGATCAGGCAATAAGGCGTCGTTTTGATAAGCGCATATATATTCCACTACCAGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCATCTGGGAGATACTCCCAACAACTTGACTGAAAAGGATTTTGAATACTTGGCTAGCAGGACTGATGGATTTTCTGGTTCAGATATATCTGTCTGTGTAAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTACTTCTATAAGAGTCCCGATGGTATGTGGATCCCTTGTGGACCAAAGCAACCGGGAGCAATACAAACCACCATGCAGGACCTTGCTTCAAAAGGACTTGCTTCTAAGATCCTTCCACCGCCGATTACTAGAACGGATTTTGAGAAGGTACTTGCTAGGCAAAGACCTACAGTTAGCAAAGCTGACCTTGATGTTCATGAAAGATTCACCAAAGAGTTCGGAGAGGAAGGTTGA	1311	0.4775	MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGPGASNGDAAVAARPKTKPKGGEGGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEKDFEYLASRTDGFSGSDISVCVKDVLFEPVRKTQDAMYFYKSPDGMWIPCGPKQPGAIQTTMQDLASKGLASKILPPPITRTDFEKVLARQRPTVSKADLDVHERFTKEFGEEG*	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g1417	436	MobiDBLite	consensus disorder prediction	73	112	-	-
	Ahy8g1417	436	Pfam	Vps4 C terminal oligomerisation domain	369	433	IPR015415	-
	Ahy8g1417	436	SMART	AAA_5	165	301	IPR003593	-
	Ahy8g1417	436	SMART	smart	2	79	IPR007330	-
	Ahy8g1417	436	Gene3D	-	128	424	IPR027417	-
	Ahy8g1417	436	Gene3D	-	301	416	-	-
	Ahy8g1417	436	CDD	AAA	136	299	-	-
	Ahy8g1417	436	Pfam	MIT (microtubule interacting and transport) domain	7	70	IPR007330	-
	Ahy8g1417	436	Gene3D	-	6	75	-	-
	Ahy8g1417	436	PANTHER	AAA-TYPE ATPASE FAMILY PROTEIN	1	436	-	-
	Ahy8g1417	436	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	128	432	IPR027417	-
	Ahy8g1417	436	SUPERFAMILY	MIT domain	2	84	IPR036181	-
	Ahy8g1417	436	CDD	MIT_VPS4	4	77	IPR045253	-
	Ahy8g1417	436	Pfam	ATPase family associated with various cellular activities (AAA)	170	299	IPR003959	GO:0005524\|GO:0016887
	Ahy8g1417	436	PANTHER	AAA DOMAIN-CONTAINING	1	436	-	-
	Ahy8g1417	436	ProSitePatterns	AAA-protein family signature.	271	290	IPR003960	GO:0005524\|GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g1417	Ahy-Chr8	30436253	30441325	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy8g1417	164	357	Calmodulin-binding Proteins	AT3G56690	36.224	5.83e-34	133

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy18g0614	18	6257896	6263026	Ahy8g1417	8	30436253	30441325	hybridization
	Ahy8g1417	8	30436253	30441325	Ahy13g0226	13	2326352	2330172	PCT
	Ahy13g0226	13	2326352	2330172	Ahy8g1417	8	30436253	30441325	PCT