Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1348 ATGATTTCAACAAGTATCGAACAAAATCAAGGGTTGATGATGCAGATGTTCCCTACTCCTCCTCCTGGGAGCGAGGATTTGGTGTCACAACAATCTATGGAAATAGTTAATAACTCTTCTGTTGGTTCTTCTTCTTCATCTACAGCTGCTGCTGCTGCTTCTTCTTCTTCACACTCAAGCTCCCTTCTCTTCAATCTCTCTGTTCTCAAGGACAAGCTTAATCAGGTTCAGACCCTGGTTGGTGTTATTCTCTCCCCAGATCAGAACCTTCAGGACTCAACTACCTCCATGGCTGTTTCAAGCATGAACTCCACAATCCAAGAAATCATAGTCACTGCAACTTCAATGATGTTCACCTGCCAACAGATCGCTCTCGCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGGTACCATTGCTACTACTGTTGCTTTCGCCAACAACCACCATGAATTGCACCAACAACAACATCAAAGGTTATTGATCAATAATAACAATAATAATCTTAGAGGTTTCTTTTCTAGCACTACTGATTCTGAGGCACTGGATAATTGGCTTGGTGAAAGCTATAACAATACTGGTGGTGTTGATTGTAAGGTTAATAATAACGATGATGATGATCCAAGTGTTGAAATTAGTGATAGCAAAGAAGGAGCAAAGAAGTTGGATATAATTGAATTGGATGCTGCGGATTTGTTGGCGAAATACACACATTACTGCAGTGTTTGTGGGAAAGGGTTCAAGCGGGATGCGAATTTGAGGATGCACATGAGAGCTCACGGTGATGAATACAAAACGAGTGCCGCATTGAGTAACCCATTGAAGCAGAACAATAACGGCGAGAATGGTGATTGCTTGCCGAAGAAGTACTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACGCAAAGTTTCAGCCATTGAAGTCAATGATATGTGCAAAGAATCACTACAAGAGAAGCCATTGTCCGAAGATGTACGTGTGCAAGAGGTGTAACCAGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCTTGTGGCACCACTTTCTCCAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTTGTTGGCCACCGAGCCCTTTCCATTGCCTTCCACCAATACAATAGTGCAGCTTAA 1194 0.4405 MISTSIEQNQGLMMQMFPTPPPGSEDLVSQQSMEIVNNSSVGSSSSSTAAAAASSSSHSSSLLFNLSVLKDKLNQVQTLVGVILSPDQNLQDSTTSMAVSSMNSTIQEIIVTATSMMFTCQQIALAFPPPPPPPPPPPPGTIATTVAFANNHHELHQQQHQRLLINNNNNNLRGFFSSTTDSEALDNWLGESYNNTGGVDCKVNNNDDDDPSVEISDSKEGAKKLDIIELDAADLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPLKQNNNGENGDCLPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHRALSIAFHQYNSAA* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1348 397 SMART c2h2final6 293 326 IPR013087 -
Ahy8g1348 397 SMART c2h2final6 241 263 IPR013087 -
Ahy8g1348 397 SMART c2h2final6 331 353 IPR013087 -
Ahy8g1348 397 MobiDBLite consensus disorder prediction 1 15 - -
Ahy8g1348 397 MobiDBLite consensus disorder prediction 1 27 - -
Ahy8g1348 397 Gene3D Classic Zinc Finger 329 379 - -
Ahy8g1348 397 Gene3D Classic Zinc Finger 241 287 - -
Ahy8g1348 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Ahy8g1348 397 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Ahy8g1348 397 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 29 391 IPR044300 GO:0010044|GO:0010447
Ahy8g1348 397 SUPERFAMILY Formin homology 2 domain (FH2 domain) 129 138 - -
Ahy8g1348 397 PANTHER OS08G0562300 PROTEIN 29 391 - -
Ahy8g1348 397 SUPERFAMILY beta-beta-alpha zinc fingers 239 266 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1348 Ahy-Chr8 29613769 29616240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1348 46 383 C2H2 Transcription Factor Family AT5G22890 49.275 2.81e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy8g1348 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1348 - - gmx:100802769 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0542 18 5284701 5287416 Ahy8g1348 8 29613769 29616240 hybridization
Ahy8g1348 8 29613769 29616240 Ahy13g0274 13 2784535 2785803 PCT
Ahy13g0274 13 2784535 2785803 Ahy8g1348 8 29613769 29616240 PCT