Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1334 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGGCCATGGTCACCTGAAGAAGACACAAAGCTGAAAGAGTACATAGACAAGCATGGAACTGGTGGAAACTGGATCGCTCTTCCTCACAAAGCTGGTCTAAAGAGGTGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATTTGAGGCCTAACATTAAGCATGGTGAATTCTCCGACGAGGAAGACAGAATAATCTGCAGTCTTTATGCTAATATTGGAAGCAGATGGTCAATTATAGCAGCACAGTTGCCAGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTCAAGAAGAAGCTCATGGCTTTGCTTCCGACTCATCATCATAATCAACAAAACCCACCACCATTCTTTCCCTACTCTTCTTCTTCTTCTTCTCTTCACATGACAACAGATAATAATAATAATAATAATCATCATCACTACTACTATTACAACACTACTACTACTACTACTACTCCACCAAGCATGTCTTTCACTACTGCTCCTCCTCCTTCAACTAGTACTAATTATTATAATTACAATACCACCATTGCAACATCAGCAATAATGTCTAGTCTCCCTTTCTACCAAAACCAACAACAAGAGCAGCAGCAAGCATTGATGAGCCCCATGCAACAGTATTACCCTATGTTTGGGAGTGAAGGGAGTTGCAGTTCATCTGATGGGAGCTGTAGCCATGGTGGGAGGGAGATGAAGAAAGAAGAAATGGGGTTTCATCATCATCACATGTTTCATCATCATGAAGAGCAGCAGCAGCAGCCTATGGTGGTTGATGATGATGGTATTAATAATAATAACCAGTGGACAGAGAAGCTAGACAAGTGGCTGTTCCAAACGGCAAACCCATTGGACTATGATTTAGAGGTGATTAAACAACTTGTTATTAGCAGCAGCGGCAATGATGGGTTGTTCAGTGTTGATGAAAACAAGACCGTACAAGAGAGCAAGCCCATTATCTACAATTACAAGTACTCTGACTGA 1035 0.4155 MGRAPCCDKANVKRGPWSPEEDTKLKEYIDKHGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALLPTHHHNQQNPPPFFPYSSSSSSLHMTTDNNNNNNHHHYYYYNTTTTTTTPPSMSFTTAPPPSTSTNYYNYNTTIATSAIMSSLPFYQNQQQEQQQALMSPMQQYYPMFGSEGSCSSSDGSCSHGGREMKKEEMGFHHHHMFHHHEEQQQQPMVVDDDGINNNNQWTEKLDKWLFQTANPLDYDLEVIKQLVISSSGNDGLFSVDENKTVQESKPIIYNYKYSD* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1334 344 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ahy8g1334 344 CDD SANT 16 62 IPR001005 -
Ahy8g1334 344 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ahy8g1334 344 Gene3D - 70 158 - -
Ahy8g1334 344 PANTHER TRANSCRIPTION FACTOR RAX3 1 318 - -
Ahy8g1334 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ahy8g1334 344 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ahy8g1334 344 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ahy8g1334 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ahy8g1334 344 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ahy8g1334 344 CDD SANT 70 111 IPR001005 -
Ahy8g1334 344 Gene3D - 7 68 - -
Ahy8g1334 344 SMART sant 13 64 IPR001005 -
Ahy8g1334 344 SMART sant 67 115 IPR001005 -
Ahy8g1334 344 PANTHER OS09G0431300 PROTEIN 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1334 Ahy-Chr8 29382421 29383978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1334 1 119 MYB Transcription Factor Family AT5G57620 89.076 7.86e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy8g1334 Myb_DNA-binding 1.40E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1334 K09422 - gmx:100796382 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0527 18 5105149 5106874 Ahy8g1334 8 29382421 29383978 hybridization
Ahy8g1334 8 29382421 29383978 Ahy13g0291 13 2933818 2935277 PCT
Ahy13g0291 13 2933818 2935277 Ahy8g1334 8 29382421 29383978 PCT