LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g1330	ATGTGTGATGCGTTGCAAGTGTCGTTATTAGAGAAAGAACTGGACAGGTATTATAACAATTCGATGTATGCACCATTCCAAGAAGAAGGGGTCGTCGAGGAGAATGCAGCGAGCGATGGAGATGATTTCGAGGGGGTTGGGGGACATTCGGTTGAGTCAGGTGCAGAAGGCATCGACGATGATGTATACGGTGATGGCTTTTATGACAACTGGGAAGAAAGGGGAATTGATAGGCTGACTGATCTGGGTTGTATGAATTTGAAAGAAATTAGGGCCGATCATATTAAAATGTTACATTTTGCAGACCGGGAAGTTGCTTTTGCTTTCTATAACCTATATGCAAAGATGAACGGGTTTGCCGCAAGAAAGTACCGGTCGTGGCGGAACATGAACAACGAGGTTACACAACAGTCCTTTGTTTGCTTTAGGCAGGGATTTAGAAAGCACAATGATTGTGAAGAACGTAAAAGGGAACCAAAGCCAGAGACCAGACGTGGTTGTGAGGCTGAGATGCGTGTACATGTACACAGGGAAAGTGGAAGATGGATCATAATCTATTTTCAGGAAGTTCATAATCACAAGATGCTTGAGGACACACTAACTTTTATGCTTCCCGGACACAGGATGATGAACGCGGCAGCTATTAATCAGATGAATATGATGCTTAAGGTCGGCATTAGGACTCCACAAATTTATGCATCATTTGTGCAAACCGCAGGAGGCCACGAAAATGTTCCGTTTTTGAAAAGAGATATGTACAACCAAATAGACAAACAAAGGAAGCTCATTGGTGGGGATGCAAAATCGTGTCTTAAGTTGTTAGAATCAATGGCAGAGCGGAACCCAGGAATGTTTGTAAGATACTTGGCAGATAAAGATGGGCGATTGGTTCACCTGTTTTGGTCAGACAATTGCAGTCAGCTAGATTTCCATCTTTTTGGGGATGTGTTAGCATTTGATGCAACATATCGTAAGAATAAGTACATGTGCCCGCTTGTGGTTTTTTCCGGTGTAAACCATCATAATCAAACAATTGTATTTGCTGCAGCACTAGTTGCAAACGAGACGGAAGAAACATACACTTGGTTACTTCAGCAGTTTCTTGAAGCAATGAAAGGGAAGGCACCTGGATGTGTTATAACTGATGGTCACGGTGCAATGAAGAAGGCCATTGAAGCTGTATTTCCAGGTGCTTATCATCGACTCTGTGCTTGGCATTTAATTAGGAATGCTACTTCAAATATTAGCAATCCAGTGTTTACATCTGAATTCAAAAAATGCATGCTATTTGACTATGAGGTATCTGAGTTTGAGGAAAGATGGCAGAAGGTTGTATCGGAACTTGGTCTCGAGACTAATCAGTGGGTGTGTGATCTTTATGCCAAGAGAGCAATGTGGGCCACTGCATATATCCGCGGACATTTTTTCGGTGGCTTCCGAACGACCTCAAGACACCATTGCATGCTCTTGAGAGATCGGCTGCAAATTCACTTACACGGGAAATTTTTCTATTGTTCAGGCCAATGCTTTCACGAGCTTGCACGTTGA	1548	0.4289	MCDALQVSLLEKELDRYYNNSMYAPFQEEGVVEENAASDGDDFEGVGGHSVESGAEGIDDDVYGDGFYDNWEERGIDRLTDLGCMNLKEIRADHIKMLHFADREVAFAFYNLYAKMNGFAARKYRSWRNMNNEVTQQSFVCFRQGFRKHNDCEERKREPKPETRRGCEAEMRVHVHRESGRWIIIYFQEVHNHKMLEDTLTFMLPGHRMMNAAAINQMNMMLKVGIRTPQIYASFVQTAGGHENVPFLKRDMYNQIDKQRKLIGGDAKSCLKLLESMAERNPGMFVRYLADKDGRLVHLFWSDNCSQLDFHLFGDVLAFDATYRKNKYMCPLVVFSGVNHHNQTIVFAAALVANETEETYTWLLQQFLEAMKGKAPGCVITDGHGAMKKAIEAVFPGAYHRLCAWHLIRNATSNISNPVFTSEFKKCMLFDYEVSEFEERWQKVVSELGLETNQWVCDLYAKRAMWATAYIRGHFFGGFRTTSRHHCMLLRDRLQIHLHGKFFYCSGQCFHELAR*	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g1330	515	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	98	501	IPR031052	GO:0006355
	Ahy8g1330	515	Pfam	FAR1 DNA-binding domain	109	196	IPR004330	-
	Ahy8g1330	515	PANTHER	OS02G0262500 PROTEIN	98	501	-	-
	Ahy8g1330	515	Pfam	MULE transposase domain	316	410	IPR018289	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g1330	Ahy-Chr8	29311420	29313121	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Ahy8g1330		MULE	3.10E-32	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy8g1330	-		-	ahf:112783567	978.778