Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1271 ATGGAGGCAAGTGACACAAATACCCCTATTTCTTCTTCTCAGTCTCCAACATCCTCTTCTTCTCTTCCACCTCCGCCGCAAGTGATAATGAGCCCTTGCGCTGCTTGTAAAATTCTTCGGCGGAGGTGTGCGGAGAAATGTGTGTTGGCCCCTTATTTTCCTCCAACTGAACCTGCCAAGTTCACCACCGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCGGAGAGTCAAAGAGCTGATGCAGTAACAAGCATGGTTTATGAAGCAGGTGCAAGGATAAGAGATCCGGTCTACGGTTGCGCCGGCGCCATTTGCCAGCTTCAGACGCAAGTGAATGAGCTTCAAGCACAGTTAGCGAAGGCTCAAGCTGAGATTGCCAACATGCAGTTTCAACAGGCCAATATGGTGGCTCTTCTTTACATGCAAATGGCGGAGGCTAATAATAAGGCTACCGCCACCACACAAGAACCGCCACCGTCACCGCAACAATCCGTGGATAACTTCATTGCAAGCCCTCCTCACATCAACAATAATCTCAACTTCTTTGACGACAACAACAACACTAGCCTCAACTCCATGTGGGAGCTTTTTGGACATGACCATATCACTACGTTTTAA 639 0.4836 MEASDTNTPISSSQSPTSSSSLPPPPQVIMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQTQVNELQAQLAKAQAEIANMQFQQANMVALLYMQMAEANNKATATTQEPPPSPQQSVDNFIASPPHINNNLNFFDDNNNTSLNSMWELFGHDHITTF* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1271 212 Pfam Lateral organ boundaries (LOB) domain 32 129 IPR004883 -
Ahy8g1271 212 Coils Coil 111 138 - -
Ahy8g1271 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 20 203 - -
Ahy8g1271 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 20 203 - -
Ahy8g1271 212 MobiDBLite consensus disorder prediction 1 26 - -
Ahy8g1271 212 ProSiteProfiles LOB domain profile. 31 132 IPR004883 -
Ahy8g1271 212 MobiDBLite consensus disorder prediction 156 175 - -
Ahy8g1271 212 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1271 Ahy-Chr8 28272190 28273959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1271 28 202 AS2 family AT2G28500 63.483 4.62e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy8g1271 LOB 5.30E-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0462 18 4082994 4085060 Ahy8g1271 8 28272190 28273959 hybridization
Ahy8g1271 8 28272190 28273959 Ahy13g0381 13 3830683 3833398 PCT
Ahy13g0381 13 3830683 3833398 Ahy8g1271 8 28272190 28273959 PCT