Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1239 ATGTATACACGCGCCACCTCATCATCAACTTTTCTCTCGCCGGATTATCCCCCAGTGCACCCGTTCCCGGACGAACTGGCCCTGACGGAGTTGGAATCGCTTCTGAACTGCAACAACTCGGAGATAATAAGCTTCAACAAGAGTAGTAGCAGCGGTAGTTACAATAGTGAGCAAGGGTCGGTGATGCAGAGGAGCGTTAGCAGCCACTCTCTCCATAAGAATCCTTTCTCTGCTCTCTTGGCTGAGTTGTTCGACGACGACGCTCCTCTTAGGAGAGTTTGCAGCACCGGTGATCTCCACGGGACTCATGGCGGCATCATGCATAACAATAATGAATCAGCTGATAGTCCATTGTCAAGTGAAAGCAGCATGATCATTGAAGGAATGAGTAGAGCATGTAGGTATAGCCCTGAGGAGAAGAAACTCAGGATTGAGAGGTATAGAACCAAGAGAAACCAAAGAAACTTCAACAAGAAAATTAAGTATGTTTGCAGGAAGACTTTAGCAGACAGCAGGCCGCGCATTAGAGGACGATTCGCGAGGAACGACGAAATTGACAAGAATCATTCATCAGTTCATCAATGGAGTCATCACATTGGTGCTGGAGCAGAGGAAGACGAAGAAGATCAAAACTGGGTCAGTATCTTTGATTCACTAGTTGCTGCTAATACGGAACAAGAGTCCCAGGACAGTTCTTCCTTCGGTCTATTGTATTAG 717 0.4672 MYTRATSSSTFLSPDYPPVHPFPDELALTELESLLNCNNSEIISFNKSSSSGSYNSEQGSVMQRSVSSHSLHKNPFSALLAELFDDDAPLRRVCSTGDLHGTHGGIMHNNNESADSPLSSESSMIIEGMSRACRYSPEEKKLRIERYRTKRNQRNFNKKIKYVCRKTLADSRPRIRGRFARNDEIDKNHSSVHQWSHHIGAGAEEDEEDQNWVSIFDSLVAANTEQESQDSSSFGLLY* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1239 238 Pfam CCT motif 142 182 IPR010402 GO:0005515
Ahy8g1239 238 PANTHER CCT MOTIF PROTEIN 24 238 - -
Ahy8g1239 238 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 24 238 IPR045281 GO:0009909
Ahy8g1239 238 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1239 Ahy-Chr8 27786979 27788512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1239 136 187 C2C2-CO-like Transcription Factor Family AT5G15850 46.154 2.71e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy8g1239 CCT 2.50E-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1239 - - gmx:102661609 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0437 18 3756180 3757681 Ahy8g1239 8 27786979 27788512 hybridization
Ahy8g1239 8 27786979 27788512 Ahy13g0404 13 4192913 4195386 PCT
Ahy13g0404 13 4192913 4195386 Ahy8g1239 8 27786979 27788512 PCT