Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1225 ATGGAAGGGAAGGATAGGGAAGTACTTTGTTTATTTATAGGCTGCTGTACTCTTTTCCTTGTAGTCAATTTCTCCGACATTCTCTTGTGTGTCTTCTTGAAAGCATACCGTTTTCTCATTAGGTGTCCTTCCTCCTCGGAAGTTAACCCTTCAAGCTCCCCTAATGATCTGCAGCATCATCAAGTTGTCATTGAGTCCTTCCCTGATATCTCTTCTCTACAAAGCGACGGCTTAGACAGCTCCGTCATAAGTTCTCTTCCGGTGTCGGAGTTCGAAAATGTGGGAGACCACAAGTCTATTAACGCAGATTGTGTCATTTGTCTCGGGGAATTTGAAAAAGGGGAGAAGCTTAAGCTGCTTCCTCAATGTGCTCATGCTTTCCATGTTTCTTGCATAGATGCATGGTTTCAGTCTCATTCCAATTGCCCACTTTGCAGGTCCCAAGTCCATCATGTTGAAGATGCTATCGCCGGGTATTCAGTGTCTTCGTATCCATTGCTGGAAACTCTGAGGAGGGAAGACTTTTCCCGAGACAGCGATGAACTAATCCGATCCGTTCGGTCCGAGTGTTGTGAGCCTCTTGCCATGGTATCAGAGCCTACTCCTTGA 609 0.4581 MEGKDREVLCLFIGCCTLFLVVNFSDILLCVFLKAYRFLIRCPSSSEVNPSSSPNDLQHHQVVIESFPDISSLQSDGLDSSVISSLPVSEFENVGDHKSINADCVICLGEFEKGEKLKLLPQCAHAFHVSCIDAWFQSHSNCPLCRSQVHHVEDAIAGYSVSSYPLLETLRREDFSRDSDELIRSVRSECCEPLAMVSEPTP* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1225 202 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Ahy8g1225 202 SUPERFAMILY RING/U-box 103 152 - -
Ahy8g1225 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Ahy8g1225 202 Pfam Ring finger domain 103 146 IPR001841 -
Ahy8g1225 202 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 158 - -
Ahy8g1225 202 SMART ring_2 104 145 IPR001841 -
Ahy8g1225 202 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 158 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1225 Ahy-Chr8 27610346 27611066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1225 51 157 C3H Transcription Factor Family AT5G17600 44.860 3.05e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1225 - - adu:107461568 406.371