Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1176 ATGAACTCGGATATAACTCACGCCACGACGGCGTCGTATTGGTGCTACAGCTGTACACGTTTCGTTCACCTTCTCGACCGACACGACGTCGTTTGCCCCCACTGCCAAAGCGGTTTCGTTGAAGAGATCCATGCCGGCCAGTCCCCTGCCATGTCTCTCTTCGCCGACGGTCTTCAAGCATCTCGCCGCCAAGGCTTCCGCCGGAGGCGCCGAAACGCTGGCAGCCGCTCGCCGTTTAACCCGGTTATCGTTCTCCGTGGACCAGGGGAGGATGGCGCTGCCGGAGGCGATAACGAGGGTTCCACTTTCGAGTTGTACTATGACGACGGCGATGGTTCCGGTCTTCGTCCTCTGCCGCCGACGATGTCAGAGTTTTTGCTCGGATCTGGATTCGATAGGTTACTAGAGCAGTTCTCTCAGATCGAGATCAACGGATTTGGTCGGCCGGAGAATCCGCCGGCATCGAAGGCGGCGATAGAGTCAATGCCAACGGTTGAGATCGGAGGCTCTCACGTGGAGACGGAAACTTACTGCGCCGTGTGCAAGGAAGCCTTTGAGCTCGGTGCGGAGGCGCGTGAGATGCCGTGTAAACACCTATACCACTCCGATTGCATCATGCCGTGGCTCACGATGCGGAATTCGTGCCCTGTGTGCCGCCACGAGCTGCCGTCCGATCAGAACGCGGCGGAAGGGAGAGTCGCCGGTCAGATCGATGAGGAAGCGGTAGGGTTGACCATATGGAGGTTGCCGGGAGGCGGTTTCGCCGTCGGAAGATTCTCCGGCGGCCGAAGATCCGGCGAGAACCGTTTGCCCGTCGTGTATACCGAGATGGACGGCGGAGGCAGCGGTGGAAGCAATGGAGGAAACTCGAACGGTGGTTCTAGAAGAATATCCCGCGCAGTTGGAAGCAGTAGGGTTAGGGAGAATCGCGGAATTGGAAGAATTTTCCGCAATTTCTTTTCCTTCTTCGGGAGAATTGGATCTAGGTCACGTTCCTCTTCGTCATCGTCGTATTCAGGTTCTGAGCATGGATCAGTGAGTAGAAGTCACAGCTATTCAAGTTCGTTTTTCAATAGAAACTCAGGGAGAAGAAGAACTTGGGTCTTGGAAGATTGA 1116 0.5609 MNSDITHATTASYWCYSCTRFVHLLDRHDVVCPHCQSGFVEEIHAGQSPAMSLFADGLQASRRQGFRRRRRNAGSRSPFNPVIVLRGPGEDGAAGGDNEGSTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIGGSHVETETYCAVCKEAFELGAEAREMPCKHLYHSDCIMPWLTMRNSCPVCRHELPSDQNAAEGRVAGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRSGENRLPVVYTEMDGGGSGGSNGGNSNGGSRRISRAVGSSRVRENRGIGRIFRNFFSFFGRIGSRSRSSSSSSYSGSEHGSVSRSHSYSSSFFNRNSGRRRTWVLED* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1176 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 311 - -
Ahy8g1176 371 MobiDBLite consensus disorder prediction 273 304 - -
Ahy8g1176 371 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Ahy8g1176 371 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Ahy8g1176 371 SMART ring_2 178 218 IPR001841 -
Ahy8g1176 371 MobiDBLite consensus disorder prediction 67 95 - -
Ahy8g1176 371 MobiDBLite consensus disorder prediction 327 356 - -
Ahy8g1176 371 PANTHER OS05G0110000 PROTEIN 8 311 - -
Ahy8g1176 371 MobiDBLite consensus disorder prediction 282 298 - -
Ahy8g1176 371 SUPERFAMILY RING/U-box 158 225 - -
Ahy8g1176 371 Pfam Protein of unknown function (DUF1117) 242 360 IPR010543 -
Ahy8g1176 371 CDD RING-H2_RNF126_like 178 219 - -
Ahy8g1176 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 225 IPR013083 -
Ahy8g1176 371 Pfam Ring finger domain 177 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1176 Ahy-Chr8 27094613 27096302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1176 117 230 C3H Transcription Factor Family AT5G01980 43.860 2.64e-27 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0370 18 3188845 3190713 Ahy8g1176 8 27094613 27096302 hybridization
Ahy8g1176 8 27094613 27096302 Ahy13g0482 13 4949761 4951590 PCT
Ahy13g0482 13 4949761 4951590 Ahy8g1176 8 27094613 27096302 PCT