Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1068 ATGAAGTGCATGTGTGAAAAAGAATCTGCTCTATGTTCTGTTCATGCAACACCAGCCTATGTTCTTGGATGCTCATCATCATGGGGTAATTCTCCTGAATCTGATGTTGTCCAACAATCATCCATGTCTGATAAATTGAACTTAAACATGGGTGTTGTTCTGCCACAACAATGTCACAAGAGTAGGCCACTAAATCTCCAATTTCAAGAGCAGGATTCATCTTCAACTCTTTCCACCAATCAATCTGGTCAAATTTCTATCCAGCATAGCAATTCTTCAGCTTGTTCATCATCACTTAGCAGAAATATGGAGAAGAGTGCTGGAAATCAAATCAGTTCTTCAATGGGGATTCTTGATTTTTCCTTCCCTCCTTCGGAACTCGATCGCGGCCAATCAACTGCTCCAATTGCATTTCATTGTGCATATCCATGCTATGGTGGCATACTAGCTGCTGCATATGACCAACACTCTAAGGTAATTGGAAGTGCAGCAGTTCGGATTCCTCTGCCACTTGATCTAAGAGAAGAACCTATATATGTGAATTCAAAGCAGTATCATGCTATACTGAGACGTAGACAGTACCGAGCTAAACTCGAAGCACATAACAAACTCATCAGAGATCGCAAACCTTATCTTCACGAGTCTCGCCATCTACATGCACTCAAGAGAGCTAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAACCTCGTCCAATCAAAGGTTACTTCTACCACCACCACTTCTTCCTACCAGGCTTACATTGGAAGGGATATCCAGGACTATACGGCAGATACCGGTGGCGCCGCCAGTCACCGCCGTCTGTCTGTTCTTATGTGA 840 0.4357 MKCMCEKESALCSVHATPAYVLGCSSSWGNSPESDVVQQSSMSDKLNLNMGVVLPQQCHKSRPLNLQFQEQDSSSTLSTNQSGQISIQHSNSSACSSSLSRNMEKSAGNQISSSMGILDFSFPPSELDRGQSTAPIAFHCAYPCYGGILAAAYDQHSKVIGSAAVRIPLPLDLREEPIYVNSKQYHAILRRRQYRAKLEAHNKLIRDRKPYLHESRHLHALKRARGAGGRFLNTKNLVQSKVTSTTTTSSYQAYIGRDIQDYTADTGGAASHRRLSVLM* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1068 279 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Ahy8g1068 279 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Ahy8g1068 279 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Ahy8g1068 279 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 35 251 - -
Ahy8g1068 279 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Ahy8g1068 279 Gene3D - 174 236 - -
Ahy8g1068 279 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 35 251 IPR001289 GO:0003700|GO:0006355
Ahy8g1068 279 MobiDBLite consensus disorder prediction 70 99 - -
Ahy8g1068 279 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Ahy8g1068 279 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1068 Ahy-Chr8 25704583 25707364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1068 4 240 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.254 1.81e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ahy8g1068 CBFB_NFYA 1.40E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1068 K08064 - gmx:100803893 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0279 18 2314947 2317516 Ahy8g1068 8 25704583 25707364 hybridization
Ahy13g0680 13 7021473 7024794 Ahy8g1068 8 25704583 25707364 PCT