Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1040 ATGGGTGCTCCGGCAAGATGGTTCAAATCATTTCTATCTCTGAAAAAGATCTCAACTACTGATCAAGAGAAGGTTAGCTCTGATAACAAGAGTAAGAAGAAGTGGAAGATATGGAAGAACTCTTCGGAATTGAAGAAGGGTGCTACTGCTGTTGCTGATGCTTCTCACAAATCTGATTCTTCTTCCTTCACTTCTGCCATGGCTGCACTTGTTCGAGCTCCACCCAAAGATTTCAAGCTCATCAAGCATGAATGGGCTGCCATACGCATTCAGGCAGTCTTTCGAGCTTTTTTGGCTAGGAGAGCTTTGAGAGCCTTGAGGGCAGTGGTAAGGTTGCAAGCTATATTTCGAGGCCGGTTAGTTCGAAAGCAAGCGGTTGTTACTCTAAGGTGCATGCAGGCTCTTGTTAGAGTTCAGGCACGCGTAAGGGCAAGGAAAGTGAGGAACTCTCCAGAAGGGAAGGCAGTGCAGAAATTGTTGGATGAACATCGCAGCCTTGCTGATCCAGTTAAGCAGGCTGAGCAAGGATGGTGTGACATTCCTGGGACTGCAGATGAAGTTAAAGCAAAGCTGAGAATGAGGCAGGAAGGAGCCATCAAAAGGGATAGAGCAATGGCATACTCTCTCTCCACACAGCATTCAAGAGGGTGTGCTAGTCCAAACTCAAGAGCCTCTAAGGCAGAGGCAATGACTCATTTCAAGCATCAGAACCTAGACACTAAGAGCTTAGGAAGCAGCTTGTTAGAACACTGGATGGCATCAAAGCCATGGGAGAGTCCAATGTCCAAGAAAAGTGATGATCACATTGTTCAATCAAGAAGGAATGGTGTGACAACCAGGATCTCAGTGAAATCTCTTCCAACAAGTCATTCGACTCCATCGTCTTCGGCGATAAGCTCTGATTGCATGTATGATGATAGCCCTGCATCAACATGCACATCAGAGGAAAGAGATGTTGTTCATAAGCCTAGCTACATGAATTTGACAAAATCAACCAAGGCAAAATTGAAGGCTTGCAGGAGTTCTTCACAGAATTCAAAGGATTCTTGTGTGTCTCATAGCACAACACTTGTGAATGGAGATGCTAGTAACAGTGCTGTTTCTGATCCATCAGTTAACTTGTGGAATGGTCTTTGTTCAACACCTCTAAGGGCAAGTTATCAAAGAAGATATGGTAGGAGCCTAGGAGGTAGATAA 1197 0.4495 MGAPARWFKSFLSLKKISTTDQEKVSSDNKSKKKWKIWKNSSELKKGATAVADASHKSDSSSFTSAMAALVRAPPKDFKLIKHEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAVVTLRCMQALVRVQARVRARKVRNSPEGKAVQKLLDEHRSLADPVKQAEQGWCDIPGTADEVKAKLRMRQEGAIKRDRAMAYSLSTQHSRGCASPNSRASKAEAMTHFKHQNLDTKSLGSSLLEHWMASKPWESPMSKKSDDHIVQSRRNGVTTRISVKSLPTSHSTPSSSAISSDCMYDDSPASTCTSEERDVVHKPSYMNLTKSTKAKLKACRSSSQNSKDSCVSHSTTLVNGDASNSAVSDPSVNLWNGLCSTPLRASYQRRYGRSLGGR* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1040 398 Pfam IQ calmodulin-binding motif 107 124 IPR000048 GO:0005515
Ahy8g1040 398 Pfam IQ calmodulin-binding motif 85 104 IPR000048 GO:0005515
Ahy8g1040 398 ProSiteProfiles IQ motif profile. 83 111 IPR000048 GO:0005515
Ahy8g1040 398 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 392 - -
Ahy8g1040 398 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Ahy8g1040 398 Gene3D - 82 130 - -
Ahy8g1040 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 126 IPR027417 -
Ahy8g1040 398 ProSiteProfiles IQ motif profile. 107 134 IPR000048 GO:0005515
Ahy8g1040 398 SMART iq_5 82 104 IPR000048 GO:0005515
Ahy8g1040 398 SMART iq_5 105 126 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1040 Ahy-Chr8 25244429 25246545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1040 1 378 IQD Protein Family AT1G72670 47.073 6.53e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1040 - - adu:107461327 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0253 18 2061750 2063905 Ahy8g1040 8 25244429 25246545 hybridization
Ahy8g1040 8 25244429 25246545 Ahy9g0502 9 6663495 6666768 PCT