Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1012 ATGGACTCCGAAGCTGACCCTCCTGAAACTGAAAACCCACCCAAAAGACACAAATGCTCGGCATGCTATAAGCAATACAAGAAAAAGGAGCATCTTATTGAGCACATGAAAATATCTTACCACTCTCTTCATCAGCCGAGATGTGGGGTTTGTCAAAAGCATTGCAAATCTTTTGAGTCTCTCAGGGAGCATCTTACCGGTCCATTGCCAAAAGGACTTTGTTCAACAATTTTCTCTCAACAAGGTTGTCAACTTTGCTTGTCACTATTTGATAGTGCCGTATCTCTCAGGGAGCATTTAGAAACATGCCGCTTATCTTCCCCTGCTCCTATGGGAACCGATGCAATGCCCTATATAAGCTCCCAAATTGACAATCTAGATTCCTGTGATGAAAATGGTCCTGGTGGACGTCCTAGAGCAATTGCAATGGATTGTGAAATGGTTGGTGGCGGGAGTGATGGATCGCTGGAAATTTGTGCTAGAGTATGCTTGGTTGATGAAGATGAGAATTTAATCTTCCACACATATGTACAGCCAATAATCCCTGTTACTAACTACAGATATGATATAACTGGGTTGACCGAAGAGAATCTTAGAAATGCTATGCCACTGAAGGAGGTTCAGGAAAAGGTATTGCAAATTCTATATAACGGAGAATCCACTGGCAAAGTTCTAGATGGGGGGAAGGCCAGGCTTCTGGTGGGGCATGACTTAGAACATGATTTTGATTGCTTGAAATTGAATTATCCCAAACACTTGCTGAGGGACACTGCAAAGTATCGACCATTGATGAAGACAAACTTGGTTAGCCATTCGCTCAAGTATCTTACCCGAACATATCTAGGTTATGATATCCAAAGCGGCGCTCATGACCCATATGAAGACTGTATCTCTGTGATGAGACTATATAAGAGAATCCGGGGTCAAATTCATAAGGAGGAAGGCTATGGAACATTGACTTCCAATAACAACATAGGCGAGTCTGATTGTTGGCAATCTGAGAAAGTAAGCAACCTCACACCAGATGAACTATATGCCATGTCAAGATCAGACTACAGATGTTGGTGTTTGGATTTGAGACCAAACTTGGCACCCTGA 1098 0.4262 MDSEADPPETENPPKRHKCSACYKQYKKKEHLIEHMKISYHSLHQPRCGVCQKHCKSFESLREHLTGPLPKGLCSTIFSQQGCQLCLSLFDSAVSLREHLETCRLSSPAPMGTDAMPYISSQIDNLDSCDENGPGGRPRAIAMDCEMVGGGSDGSLEICARVCLVDEDENLIFHTYVQPIIPVTNYRYDITGLTEENLRNAMPLKEVQEKVLQILYNGESTGKVLDGGKARLLVGHDLEHDFDCLKLNYPKHLLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGAHDPYEDCISVMRLYKRIRGQIHKEEGYGTLTSNNNIGESDCWQSEKVSNLTPDELYAMSRSDYRCWCLDLRPNLAP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1012 365 Pfam Exonuclease 141 303 IPR013520 -
Ahy8g1012 365 Gene3D Classic Zinc Finger 2 67 - -
Ahy8g1012 365 PANTHER EXONUCLEASE FAMILY PROTEIN 14 361 - -
Ahy8g1012 365 SMART exoiiiendus 139 312 IPR013520 -
Ahy8g1012 365 ProSitePatterns Zinc finger C2H2 type domain signature. 19 41 IPR013087 -
Ahy8g1012 365 Gene3D - 136 319 IPR036397 GO:0003676
Ahy8g1012 365 CDD REX4_like 141 304 IPR037431 GO:0006364|GO:0008408
Ahy8g1012 365 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 14 361 - -
Ahy8g1012 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 46 IPR013087 -
Ahy8g1012 365 SUPERFAMILY Ribonuclease H-like 140 307 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1012 Ahy-Chr8 24903776 24906754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1012 1 362 C2H2 Transcription Factor Family AT2G48100 54.945 2.49e-141 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1012 K18327 - gmx:100805841 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0223 18 1779410 1782437 Ahy8g1012 8 24903776 24906754 hybridization