Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1009 ATGAGGACGATCAAAGAGTTTTTCTTGAGGCACTACTACTCTCTTTGGCTGTCACCATCACTATCACCACCGTCACACATGAATTCTAACGACGTAGAAAATCACAGAAACAGCGACGTCACCACAAAACAAATAAAGATCAACAAAGAGGAGGGAAGAGGCGAGTCATCCTCGATTTCCTCGTTCTTATGCGAAATCTGCATTGATACTAAAACCGAAGTAGAAAATTTCTCTATAACCGGTTGCAGCCACTCATATTGTACGAATTGCGTGGTGAAGTACGTTGGTTCTAAGCTTGACGACAACGTGATTAATATCTGGTGTCCGACTCTTCGGTGTGGTGGTTTCTTGGAACTCGACGGTTGCCGCGAGGTTCTACCAAAGATGGTTTTCGATCGATGGGATAAGTTATTGTGTGAAGCTGCTGTTGTTGAGAATGAGAGCGAGAGATTCATGTATTGCCCCTTCAAGGACTGCTCTGCCCTTATGATCGTCGACGATGATTCACCGACGGAATCAGAATGCCCTAGCTGTAATAGGCAGATCTGTGTCACGTGCGAGGCAGTTTGGCATCATGGGAGCACGTGCGAGGAATTTGGGAGGACATATAATGAATATAAAGTAGTGATGGAGGTAGCGGCCAGGAACCAGTGGATGAGGTGCCCAAACTGCAGGTTCTTTGTTGAGAAAAAATGTTTCACCTGCGATAAAATCCGTTGCAGATACAAAACTGCCATATAA 741 0.4507 MRTIKEFFLRHYYSLWLSPSLSPPSHMNSNDVENHRNSDVTTKQIKINKEEGRGESSSISSFLCEICIDTKTEVENFSITGCSHSYCTNCVVKYVGSKLDDNVINIWCPTLRCGGFLELDGCREVLPKMVFDRWDKLLCEAAVVENESERFMYCPFKDCSALMIVDDDSPTESECPSCNRQICVTCEAVWHHGSTCEEFGRTYNEYKVVMEVAARNQWMRCPNCRFFVEKKCFTCDKIRCRYKTAI* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1009 246 ProSiteProfiles Zinc finger RING-type profile. 64 112 IPR001841 -
Ahy8g1009 246 Pfam IBR domain, a half RING-finger domain 133 196 IPR002867 -
Ahy8g1009 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 146 IPR013083 -
Ahy8g1009 246 Pfam Zinc finger, C3HC4 type (RING finger) 64 101 IPR018957 GO:0046872
Ahy8g1009 246 ProSiteProfiles TRIAD supradomain profile. 60 246 IPR044066 -
Ahy8g1009 246 SMART ibrneu5 132 196 IPR002867 -
Ahy8g1009 246 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 48 242 - -
Ahy8g1009 246 SUPERFAMILY RING/U-box 61 141 - -
Ahy8g1009 246 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 242 IPR031127 GO:0004842|GO:0016567
Ahy8g1009 246 SUPERFAMILY RING/U-box 146 199 - -
Ahy8g1009 246 ProSitePatterns Zinc finger RING-type signature. 82 91 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1009 Ahy-Chr8 24858727 24859993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1009 64 242 C3H Transcription Factor Family AT2G19610 25.389 1.58e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1009 K11975 - gmx:100803898 202.216