Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g1001 ATGGAGGATGGCCCCGAGCGGCTAGTTGAGAATTCTCATGAAAATTCAGAAATGGAGGTTGTTGACGATGACGATGCCGCTTTGCAGCGCCAGCACCATTCAGAAGAGGATCAGAATGTGGATTCCAACTCCCCTGCTCAGCTCCAACAGGATCATGTCATGTTCGATCGGCAAAGTGATGACAACAAGAATGCCAATTCTGCTCTTCTTTCTGTGCTAGAGACCAAGACGGATAGTAGTAACACGCGCCATGAGAATCGCTTTCAAGATCTTAAAGTCCATTCGCACCATGAATTGCTCACTCCGAAGCCTAAAGAGAGGAATGTTAGGGAAATGAAAAACGTGCTCCATGATACTGAGATGACTGATTATGATGAGTCTGGTTCGTACTCCGAACGAGAAGCATTTATGAGAGAGCTGGAGAGTTTCTATAGAGAGAGATCCTTGGAGTTCAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTCAAGTTATGGAGAGCTGTCATCAAACTTGGTGGCTACGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCATCCACCCAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGTATAAGAGAGAAATTGGGGAGCTACAGCTCCCTGTTGGATCATTTCATCAATCTTCAAGTGTGGAAAAAGAGGCTCCAGGCTCTGGCTCTGGCAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCCCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGATAAGAACTCCAATTCTACTCCGAAACGAGAAAAGAACCTCAAAAGTATTGGTATGCTAAATAAACACAGGACACCATCTGTTCTTGAGCATGCTGGGAAAGCTGCAAATATTGAAGGAGATAGACAATTGGTCACGGCAGTTGTAGATGTTGGACCCCCAGCAGACTGGGTGAAGGTCAATGTGCGAGAAACTAAGGATTGTTTTGAGGTTTATGCACTAGTTCCTGGACTCCTTCGCGAGGAGGTGCGAGTCCAATCTGATCCAGTTGGTCGTCTAGTTATAACTGGTCTCCCAGAACATGTTGACAATCCATGGGGAATCACCCCTTTCAAGAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTAGTTAGTTTGCATGGCCGACTGTTTGTACGTGTTCCCTTTGAGCAGGGAGCTGTGTAA 1284 0.4634 MEDGPERLVENSHENSEMEVVDDDDAALQRQHHSEEDQNVDSNSPAQLQQDHVMFDRQSDDNKNANSALLSVLETKTDSSNTRHENRFQDLKVHSHHELLTPKPKERNVREMKNVLHDTEMTDYDESGSYSEREAFMRELESFYRERSLEFKPPKFYGEPLNCLKLWRAVIKLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKREIGELQLPVGSFHQSSSVEKEAPGSGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNSNSTPKREKNLKSIGMLNKHRTPSVLEHAGKAANIEGDRQLVTAVVDVGPPADWVKVNVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g1001 427 Gene3D - 130 228 IPR036431 GO:0003677
Ahy8g1001 427 MobiDBLite consensus disorder prediction 1 62 - -
Ahy8g1001 427 Pfam ARID/BRIGHT DNA binding domain 132 217 IPR001606 GO:0003677
Ahy8g1001 427 CDD ACD_sHsps_p23-like 342 421 - -
Ahy8g1001 427 MobiDBLite consensus disorder prediction 1 16 - -
Ahy8g1001 427 MobiDBLite consensus disorder prediction 23 39 - -
Ahy8g1001 427 SMART ARID_2 127 217 - -
Ahy8g1001 427 ProSiteProfiles ARID domain profile. 130 221 IPR001606 GO:0003677
Ahy8g1001 427 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 326 427 IPR002068 -
Ahy8g1001 427 SUPERFAMILY ARID-like 120 228 IPR036431 GO:0003677
Ahy8g1001 427 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 13 424 - -
Ahy8g1001 427 Gene3D - 328 426 IPR008978 -
Ahy8g1001 427 SMART bright_3 131 222 IPR001606 GO:0003677
Ahy8g1001 427 CDD ARID 132 217 - -
Ahy8g1001 427 SUPERFAMILY HSP20-like chaperones 335 422 IPR008978 -
Ahy8g1001 427 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 13 424 IPR045147 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g1001 Ahy-Chr8 23661492 23666479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g1001 101 424 ARID Transcription Factor Family AT1G76510 68.882 4.82e-154 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy8g1001 ARID 4.50E-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g1001 - - adu:107461292 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2116 17 100883423 100888404 Ahy8g1001 8 23661492 23666479 hybridization