Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0996 ATGCAACTAAGTAGTTGCAGCCGCCAGCCGCCTTTGAGTTTAGCATTTTCTACCACAAAAGAGAAATTAGCTGAAGCCTTTTCAGAATATGGCAATGTCCTAAATGCTGATATAGTACTGAACAAAGCCAAGAACAGATCTAAGGGTTTTGGATATGTGACCTTTGCTAAGGAGGAAGAAGCCCGCAAGGCACAGATGGCTATGAATGGAAAGATATTGCATGGACGTGTTCTGTACGTGGATATGGAACCAAATAAGAAACCAGAAAAATCATCTTTTGACAAGGCAACTACTGATGGTTGA 303 0.4125 MQLSSCSRQPPLSLAFSTTKEKLAEAFSEYGNVLNADIVLNKAKNRSKGFGYVTFAKEEEARKAQMAMNGKILHGRVLYVDMEPNKKPEKSSFDKATTDG* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0996 100 SMART rrm1_1 14 81 IPR000504 GO:0003723
Ahy8g0996 100 SUPERFAMILY RNA-binding domain, RBD 14 88 IPR035979 GO:0003676
Ahy8g0996 100 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 85 IPR000504 GO:0003723
Ahy8g0996 100 PANTHER TRANSFORMER-2-RELATED 14 86 - -
Ahy8g0996 100 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 78 IPR000504 GO:0003723
Ahy8g0996 100 Gene3D - 13 95 IPR012677 -
Ahy8g0996 100 PANTHER RNA RECOGNITION MOTIF 14 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0996 Ahy-Chr8 22613095 22614541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0996 17 93 Eukaryotic Initiation Factors Gene Family AT1G22760 38.961 2.51e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0996 - K13195 gmx:100527061 116.701