Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0965 ATGGGGAGAGTGAAGGTTCCCATAAAAAAAATTGAGAACATAACAAACAGGCAAATTACATTTTCTAAGAGAAAGAATGGTTTCATTAAGAAAGCTTACGAGCTTTCTGTTCTTTGTGATGTTGATGTTGTTCTCATCACGTTCTCTCCTTCTGGCAGACCAACTCTCTTCTCTTCCAACACAAGCTTTGATGAAATTCTAGAGCGATATATTAATCTTCCACCACAAGAACGCCAAAAGATCTATAACCAAGAGAACATGCAGAGGATGATTAATAAATTGAAAATTGAAGCAGAACAAATATGCCAAGTCCCTAGCCCGGTTAATTCAGATTTCCAGCTTGAGAAAATTCAAAAAGAATTATATATTTGCAAGTCTCACTTAGAAGAAATGGAGAAACGGCTAAGGATATTTGAAGGTGATCCACGTGAGATCACTACACTTTGTGAGGCTGAATATCGCCAGCATATTCTTCAGCAAACTCTAGAGCAAGTGCAGTTAAGAAAGGTAAGATAA 516 0.3702 MGRVKVPIKKIENITNRQITFSKRKNGFIKKAYELSVLCDVDVVLITFSPSGRPTLFSSNTSFDEILERYINLPPQERQKIYNQENMQRMINKLKIEAEQICQVPSPVNSDFQLEKIQKELYICKSHLEEMEKRLRIFEGDPREITTLCEAEYRQHILQQTLEQVQLRKVR* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0965 171 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy8g0965 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy8g0965 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy8g0965 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy8g0965 171 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Ahy8g0965 171 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 170 - -
Ahy8g0965 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy8g0965 171 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Ahy8g0965 171 PANTHER MADS BOX PROTEIN 1 170 - -
Ahy8g0965 171 Coils Coil 114 134 - -
Ahy8g0965 171 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Ahy8g0965 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0965 Ahy-Chr8 18490869 18492813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0965 1 169 Type I MADS-box Gene Family AT1G22130 45.355 2.07e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy8g0965 SRF-TF 5.10E-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0965 - - ahf:112705107 340.887