Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0920 ATGCAAGAAACAATGCCTACTCCTCCTCCTCTGAAGGTGTTGATTGAAGAGATGGAGTCATCAATGGAAGATGTTCCTTCGGTTTTCATCTGTCCCATCTCGCTGGAGCCAATGAGAGACCCAGTCACACTCTGCACCGGCCAAACCTACGACAGGTCCAACATCCTCAAATGGTTGTCCCTCGGCCACAACACTTGTCCTACCACCATGCAACACCTTTGGGACCTCTCCCTCACCCCCAACACCACCCTCCACCGCTTCATCCTCACATGGTTCTCTCACAACTACTTCTCCATCAAGAAAAGCCTCCAAGACGTTCAACGCACAGCCTTTCACCTCTTGGAATCACTCAACAAGGTTAAGGGTCAAGCAAGAGTTAAATCCCTCAAGGAACTTCGCCACCTCCTTCATTCTCACGCTTCAATAAGGAAGACAGTTGTGGAACACAACGGACTTGCCTTGGTTTCTTCATTGTTAGGTCCTTTCACTTCCCATGCTGTTGGGTCAGAAGCCGTTGGGATACTCGTGAAGCTGGACTTGAGTTCAGAGGTTAAGAAGAATCTGATGCATCCATCAAAAGTGTCGTTATTGGTGGATATCATGAACGAGGGAACCGTTGAAACAAAGATGAACTGTGCAAAGTTGATTGAGATATTGTTGTTAGAAGGACACGTGTCAAGCTTGAGTCTGTTGGTGGGTTTGTTGAGGTTAGTTAGAGACAAGAAACACCCAACTGGGGTGGTCTTGAACGGCCTCAAGCTGATCAAGATGATGTGCAGTTCCCAAGAATCAGTTAGAACTTCCATTGTGAGAATCGGAGCGGTGCCGCAGCTGGTGGATCTATTGCCAACACTAAACGATGAGTGCTTGGAAATAGCGCTGTTTATTCTGGAGGTGGTGTCGACGATTCCAGAAGGAAGAATGGCGTTGAGAGATTGTCCCAATGTTGTGATTAATTTGGTGAAGTTGTTGATGAGAGTCTCTGAGAGGTGCAAGCTATTTGCGCTTTCGATATTGTGGGCTATTTACAAGCTTGCGCCGGAACAATGTGCCTCCGAGGCGGTGGAGGCTGGGTTGGCGGCGAAGCTGCTTCTGGTGATTCAAAGCGGTTGCAACCCTGTTTTAAAGCACATGTCTGCTGAGTTCTTGAAATTGTGCAGTTTGAATTACTCTGCTAGTATCTTCATCTCTAAGTGTATGCTTACCACAACAATACAATGA 1221 0.4717 MQETMPTPPPLKVLIEEMESSMEDVPSVFICPISLEPMRDPVTLCTGQTYDRSNILKWLSLGHNTCPTTMQHLWDLSLTPNTTLHRFILTWFSHNYFSIKKSLQDVQRTAFHLLESLNKVKGQARVKSLKELRHLLHSHASIRKTVVEHNGLALVSSLLGPFTSHAVGSEAVGILVKLDLSSEVKKNLMHPSKVSLLVDIMNEGTVETKMNCAKLIEILLLEGHVSSLSLLVGLLRLVRDKKHPTGVVLNGLKLIKMMCSSQESVRTSIVRIGAVPQLVDLLPTLNDECLEIALFILEVVSTIPEGRMALRDCPNVVINLVKLLMRVSERCKLFALSILWAIYKLAPEQCASEAVEAGLAAKLLLVIQSGCNPVLKHMSAEFLKLCSLNYSASIFISKCMLTTTIQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0920 406 Gene3D - 109 227 IPR011989 -
Ahy8g0920 406 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Ahy8g0920 406 CDD RING-Ubox_PUB 29 71 IPR045210 -
Ahy8g0920 406 Gene3D - 228 400 IPR011989 -
Ahy8g0920 406 SUPERFAMILY ARM repeat 230 390 IPR016024 -
Ahy8g0920 406 SUPERFAMILY RING/U-box 13 95 - -
Ahy8g0920 406 SUPERFAMILY ARM repeat 69 262 IPR016024 -
Ahy8g0920 406 Pfam U-box domain 25 95 IPR003613 GO:0004842|GO:0016567
Ahy8g0920 406 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 11 405 - -
Ahy8g0920 406 PANTHER WDSAM1 PROTEIN 11 405 IPR045185 GO:0061630
Ahy8g0920 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Ahy8g0920 406 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0920 Ahy-Chr8 17823216 17825183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0920 11 406 U-box Gene Family AT3G49810 60.100 4.91e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0920 - - aip:107608514 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3208 17 134172663 134174147 Ahy8g0920 8 17823216 17825183 hybridization