LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g0895	ATGGAGGAATACACTAATAATAGCAACAATAATCAAAGCCCAAGTTCAAGTTCAAGGGCAAGTTTCTTGTACTCTTCCTTTGGTGTTGGTGCTGCTACTTCTTCAAGCATACCCCATCACCTTCCAATTAACACCTTTCATCTTCTTCATCATCATCAATCTGAAGCTGCTGCTGGATCCGATCACTGCTTTCAATCCCATCAAGTACCATCCGTCAAAACCGAACCCAGAAACTCCTCGCAGCAGATTTTCAACTATCCTCTCATGAGACCCAATGATCTTCATCATTCGAGCGACCAAGGAGGAACCCAAAACTCCAACGATGATGTTGAAGCCATCAAAGCCAAAATCATCGCCCATCCTCACTACTCTAATCTCTTACAAGCCTACATGGATTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTTTAAGCGCGGCTCGGCAGGAATTCGAGGCACGGCAGCGCTCTATGGTTGGTTCCACCAGGGAAGCTTGCGGCAAGGACCCTGAACTTGACCAATTCATGGAGGCATACTATGATATGCTTGTGAAGTACCGAGAGGAACTTTCAAGGCCTATACAAGAGGCTATGGACTTCATGCGCAGGATTGAAACTCAGCTTAATATGCTTTCCAATGGACCCCTTCGCATCTTCTCTGATGATAAATGTGAAGGAGTGGGTTCATCGGAAGAGGATCAACAAGAAAACAGTGGCGGGGAGGAAGAATCAGAAGTAGTGCCGGAGATTGATCCTCGGGCAGAAGACCGTGAACTGAAGAACCACTTGCTTAGAAAGTACAGCGGCTACTTAAGCAGCCTGAAGCAAGAACTGTCAAAGAAGAAGAAGAAAGGAAAACTCCCTAAAGATGCCAGGCAAAAGCTACTTACTTGGTGGGAGCTACATTATAAATGGCCTTATCCTTCGGAATCAGAGAAGGTAGCATTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCTGAAGACATGCAATTCATGGTCATGGATGGACTCCATCCGCATAATAATCATCAGAACGCATCTCCTCTCTACATGGATTCCCATTATGTTATGCCTGATGGACATTACCGCTTACCACCATAA	1155	0.4571	MEEYTNNSNNNQSPSSSSRASFLYSSFGVGAATSSSIPHHLPINTFHLLHHHQSEAAAGSDHCFQSHQVPSVKTEPRNSSQQIFNYPLMRPNDLHHSSDQGGTQNSNDDVEAIKAKIIAHPHYSNLLQAYMDCQKVGAPPEVVARLSAARQEFEARQRSMVGSTREACGKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIETQLNMLSNGPLRIFSDDKCEGVGSSEEDQQENSGGEEESEVVPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPHNNHQNASPLYMDSHYVMPDGHYRLPP*	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g0895	384	SUPERFAMILY	Homeodomain-like	281	356	IPR009057	-
	Ahy8g0895	384	MobiDBLite	consensus disorder prediction	59	79	-	-
	Ahy8g0895	384	Pfam	ELK domain	260	281	IPR005539	GO:0003677
	Ahy8g0895	384	PANTHER	HOMEOBOX PROTEIN KNOTTED-1-LIKE 1	1	375	-	-
	Ahy8g0895	384	Pfam	KNOX2 domain	169	213	IPR005541	GO:0003677\|GO:0005634
	Ahy8g0895	384	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	1	375	-	-
	Ahy8g0895	384	SMART	KNOX1_2	111	155	IPR005540	GO:0003677\|GO:0005634
	Ahy8g0895	384	SMART	HOX_1	282	347	IPR001356	GO:0003677
	Ahy8g0895	384	CDD	homeodomain	292	344	IPR001356	GO:0003677
	Ahy8g0895	384	SMART	ELK_2	260	281	IPR005539	GO:0003677
	Ahy8g0895	384	SMART	ELK_2	173	193	IPR005539	GO:0003677
	Ahy8g0895	384	Gene3D	-	285	347	-	-
	Ahy8g0895	384	Pfam	KNOX1 domain	112	154	IPR005540	GO:0003677\|GO:0005634
	Ahy8g0895	384	ProSiteProfiles	'Homeobox' domain profile.	280	343	IPR001356	GO:0003677
	Ahy8g0895	384	ProSitePatterns	'Homeobox' domain signature.	318	341	IPR017970	GO:0000981\|GO:0006355
	Ahy8g0895	384	Pfam	Homeobox KN domain	300	339	IPR008422	GO:0003677\|GO:0006355
	Ahy8g0895	384	SMART	KNOX2_2	164	215	IPR005541	GO:0003677\|GO:0005634
	Ahy8g0895	384	ProSiteProfiles	ELK domain profile.	260	280	IPR005539	GO:0003677
	Ahy8g0895	384	MobiDBLite	consensus disorder prediction	224	257	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g0895	Ahy-Chr8	17312910	17317070	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy8g0895	48	384	Homeobox Transcription Factor Family	AT4G08150	67.335	1.49e-143	411

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Ahy8g0895		KNOX2	1.00E-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy8g0895	-		-	gmx:100807602	480.715