Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0879 ATGGCAAGGAAATGCACGTATTGTGGGAATTCTGGTCACAATTCAAGGACTTGCAACCACAGTTTCAGTAGTACCACAGGGGGGTGTAGTGGACTAAAGCTCTTTGGGGTACAACTTGATGATAATCAATATTATTCTTCTTCTTCATGCATGGACTACCTGCTATCCTTATCTGCTGCTGCTTCTTTATCATCGTCGCTTGTAGGTGCAAATAAAAATTCACATGAAATATCTTATTCTTACTTAACCTCCGGTGCCAGCAGTAGTGGTCTTATGTCAACGATCAAAGACAATAACAAAGGATTGGCATGGAGTGAGGAGGAGCACCGTATATTCCTAGAGGGGATGGAGAAGCTGGGGAAGGGTAACTGGAGAGGCATATCCAGATGTTTTGTGAGAACCAGAACACCCACTCAAGTGGCCAGCCATGCACAAAAGTATTTTCTCCGTCAGACTCGCCGGCGGAACACTTTCAGATCAAGAAAACACCGCCTCACCCTAGCAAATGAGGGCACTAGGAATAGCGATGCCGTTGTTCTATCTCACTGGCTTGCCTCTGCAACTTCAACAAATTGCACCTCAATTCAAGGCGCAGCAGCTCCTGATTTAGAATTGAAACTTGCAACTCCCTCTCCCTCCCTCTAA 645 0.4558 MARKCTYCGNSGHNSRTCNHSFSSTTGGCSGLKLFGVQLDDNQYYSSSSCMDYLLSLSAAASLSSSLVGANKNSHEISYSYLTSGASSSGLMSTIKDNNKGLAWSEEEHRIFLEGMEKLGKGNWRGISRCFVRTRTPTQVASHAQKYFLRQTRRRNTFRSRKHRLTLANEGTRNSDAVVLSHWLASATSTNCTSIQGAAAPDLELKLATPSPSL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0879 214 Gene3D - 104 154 - -
Ahy8g0879 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 152 IPR017930 -
Ahy8g0879 214 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Ahy8g0879 214 SMART sant 100 150 IPR001005 -
Ahy8g0879 214 Pfam Myb-like DNA-binding domain 103 148 IPR001005 -
Ahy8g0879 214 CDD SANT 103 148 IPR001005 -
Ahy8g0879 214 PANTHER TRANSCRIPTION FACTOR KUA1 1 164 - -
Ahy8g0879 214 ProSiteProfiles SANT domain profile. 104 152 IPR017884 -
Ahy8g0879 214 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 99 151 IPR006447 GO:0003677
Ahy8g0879 214 SUPERFAMILY Homeodomain-like 99 153 IPR009057 -
Ahy8g0879 214 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 164 - -
Ahy8g0879 214 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Ahy8g0879 214 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0879 Ahy-Chr8 17077264 17078451 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ahy8g0879 Myb_DNA-binding 1.80E-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0879 - - aprc:113866246 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3166 17 133485337 133486519 Ahy8g0879 8 17077264 17078451 hybridization