Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0732 ATGACGAGGACGAAGATAAAGATAAAGAAGATCGATAACGTAGCGGCAAGGCAGGTAACGTTTTCGAAGAGGAGGAGAGGGCTGTTGAAGAAGGCTCATGAGCTTTCTGTGCTTTGTGATGCTGAGCTTGCTCTCATTGTTTTCTCAGCTACCGGCAAGCTCTTTCATTATGCCAGTTCCAGTTTGGACGACACAATTAAAAGGTATAATAATGGGCACTTTCATGACATCAACAAATTGGAAAGACTTCCGAACCTGCAGATTGAGGATAGCGCCAAGTTATGTGAGGAAGTTGCAAAACGAACTCAAGAACTAAGGAGGATGGATGGTGAGGATCTTGAAGGATTAGACTTGAGGGGCTTGCAGAACTTGGAGAAAACACTTGAAACAGGACTCGATCGTGTCATTCGCATGAAGGAGAAGCGGATTATGGGTGAGATTTTGCAACTTCAGAATAAGGGGATTACGTTGGAAGAGGAGAACAAGCAGTTAAAGCAAAAGGTGGCTGTTCTGCGAAAAGGGAAAAATAATCCTCCATTTCTGTTGGATTTGGATGATACTACTGATGGGAATGATAACAATAATAATAATAATAATAATAATGATGATGAGGAAGGTACCTCATTCATAGAATCTATGAATAACATTAGCAGTTGCAGCAGTAACCTTCCTCCAGAGGATGATTCATCAGACACTTCTCTCAAGTTAGGGTTACCCTTCTCTAACTAA 729 0.4143 MTRTKIKIKKIDNVAARQVTFSKRRRGLLKKAHELSVLCDAELALIVFSATGKLFHYASSSLDDTIKRYNNGHFHDINKLERLPNLQIEDSAKLCEEVAKRTQELRRMDGEDLEGLDLRGLQNLEKTLETGLDRVIRMKEKRIMGEILQLQNKGITLEEENKQLKQKVAVLRKGKNNPPFLLDLDDTTDGNDNNNNNNNNNDDEEGTSFIESMNNISSCSSNLPPEDDSSDTSLKLGLPFSN* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0732 242 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Ahy8g0732 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy8g0732 242 Pfam K-box region 90 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy8g0732 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy8g0732 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy8g0732 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy8g0732 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Ahy8g0732 242 Coils Coil 147 167 - -
Ahy8g0732 242 MobiDBLite consensus disorder prediction 176 242 - -
Ahy8g0732 242 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Ahy8g0732 242 MobiDBLite consensus disorder prediction 187 242 - -
Ahy8g0732 242 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 236 - -
Ahy8g0732 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy8g0732 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy8g0732 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy8g0732 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 236 - -
Ahy8g0732 242 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy8g0732 242 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0732 Ahy-Chr8 14471622 14478394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0732 1 240 MADS-box Gene Family AT2G22540 46.122 8.39e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy8g0732 K-box 5.50E-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0732 - - gmx:100776749 232.646