Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0730 ATGGCTTCTTCTTCTTTTTCATTCTTCTCGTTTTTAATAACATTCACTTTTCTTCTACTTGCTAACCTCAGCACTGTTGCATATGCAGTGGCTAATCAAACTAGAGAAACGCCGCCGCCGCCACCGCCACCACCGCCGCCGGATTCCCAAAGAACTTCATCCGCCTTCAAGCCAGGCATGGCGGTGGTAGTTGGCATATTAACCACCATGTTCTCTCTCACCTTCCTCCTCCTCCTCTACATCAAGCACTGCAACGGCGGGGCCACCGACTCCACCGGAGCTACCGGAACCCGCTACAATTACACCTCACGCGCGGCAACGTTCGCTGGAAGAAAAAACTCCGGCATCGACCGTTCCATAGTGGAATCGCTTCCAATCTTCAGATTCGGGTCCCTCCGGGGACAAAAAGAAGGACTCGATTGCGCGATTTGTCTCGCAAAATTCGAGTCCTCTGAACTCCTCCGGCTCCTCCCGAAATGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTTGACGCGCACTCCACGTGTCCTTTGTGCCGGCATCGAGTGGATCCGGAGGACATTCTTCTGGTGGAAGACAACAATGCAGCCGCACCGGTGCACCCTCAGAGCGAGAACGAAGCGTGTTCGGAGAGGTACGAAACACGGCGAGTCTCCGGAAGGCATTCGTGGGTTGGTGAGAAAGAAGGAGGGTTCTTGGAGATCATTGTTGAGAACGAGAACGAAACAGAACGACGAAACGCAGCGCCAACGTCGTCGTTTAGGAGGTCGCTTGATAGTGCCACGTGTGCAACGACATCGAAATCGAATAATAATAATAATAATAACAAGAAGTGGTTAATGCGTCCAAGAAAAGACGGGATGCTGTTGGTGAAAACGACGACGCATCAGGAAGCGGAGAAAGAGAAAGAAAGGAGGAGCACCGGTGCGGAACGGAGGTTGGAGCACAGGATAATTGTCTCTCCTACCCCTAAACAATGCGGTTACGATTATAATGGTTTGTTGCGAGGGCAGTTACAACGGTGGAGCGATGTTCAGCCGTCGGATCTACTTTACCTGACATCGGAGATGATAATAAGTAAGCATAATAACGGTAGTGGTGCTGAAATCGGGGGCAATTTGGTAATTAACACGAGGAGTATGTCTGAGATAACGGGATTGAGCAGGTTTGTGAGGAACGGTAACGGTAACGGTAGTAACAGGGAAGAAGAACAAGGAGTAAGAGGAGGAAGAAGAAGAGAAGAGGGGGTTGTTACGAGGTGGCTGGGATGGATATCAAGGACGCAGACACAGCCAGCTGTACGGTAG 1317 0.5125 MASSSFSFFSFLITFTFLLLANLSTVAYAVANQTRETPPPPPPPPPPDSQRTSSAFKPGMAVVVGILTTMFSLTFLLLLYIKHCNGGATDSTGATGTRYNYTSRAATFAGRKNSGIDRSIVESLPIFRFGSLRGQKEGLDCAICLAKFESSELLRLLPKCKHAFHVECVDTWLDAHSTCPLCRHRVDPEDILLVEDNNAAAPVHPQSENEACSERYETRRVSGRHSWVGEKEGGFLEIIVENENETERRNAAPTSSFRRSLDSATCATTSKSNNNNNNNKKWLMRPRKDGMLLVKTTTHQEAEKEKERRSTGAERRLEHRIIVSPTPKQCGYDYNGLLRGQLQRWSDVQPSDLLYLTSEMIISKHNNGSGAEIGGNLVINTRSMSEITGLSRFVRNGNGNGSNREEEQGVRGGRRREEGVVTRWLGWISRTQTQPAVR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0730 438 Pfam Ring finger domain 140 183 IPR001841 -
Ahy8g0730 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 32 433 - -
Ahy8g0730 438 MobiDBLite consensus disorder prediction 394 415 - -
Ahy8g0730 438 PANTHER RING-H2 FINGER PROTEIN ATL43 32 433 - -
Ahy8g0730 438 SUPERFAMILY RING/U-box 125 188 - -
Ahy8g0730 438 SMART ring_2 141 182 IPR001841 -
Ahy8g0730 438 MobiDBLite consensus disorder prediction 35 51 - -
Ahy8g0730 438 MobiDBLite consensus disorder prediction 246 284 - -
Ahy8g0730 438 MobiDBLite consensus disorder prediction 249 281 - -
Ahy8g0730 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 190 IPR013083 -
Ahy8g0730 438 CDD RING-H2_EL5_like 140 183 - -
Ahy8g0730 438 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Ahy8g0730 438 MobiDBLite consensus disorder prediction 33 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0730 Ahy-Chr8 14418166 14420135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0730 53 437 C3H Transcription Factor Family AT5G05810 44.527 1.25e-82 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0730 K19041 - twl:119999828 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1719 17 40591839 40593433 Ahy8g0730 8 14418166 14420135 hybridization