Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0609 ATGCCTCGCCGTAGTGCTCCGTCCTCATCATTGCCGCCGAGGCCAACACCAATTCCCGCCAAATTCTGGCGCGCATGTGCTGGAATCTCTGCGAAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGATCAAGCTGCTTCGCAACCGCGAAACCTTTCACCTCTGGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTACTTCGCGGACCCTAACACCGACGAGGTCTTCCTCAAGATTCTTCTTGTTCCTGTCACCGATGGATCCGCTCAAGATTTTCTTCCACCTGCCGTCGCCGCCGAAGGCAACAGTGGCAACGGCATTGGCGACGATGAAGAGGTTGCGTCGTACGCCAAGATTCTCACGCGGTCCGATGCGAATAATGGCGGAGGGTTTTCGGTGCCGAGATCCTGTGCGGACTTGGTCTTCCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGAACCTTAGAATAACCGATCTACACGGCGCCGTATGGGAGTTTCGCCACATCTACCGCGGGACTCCGAGACGGCACCTCTTCACATCTGGCTGGAGCAAGTTCGTTAACAGTAAGAAGATTATCTCCGGCGATACTGTGGTTTTCATGAAGGACTCCGATGGGAGGATGTTCGTCGGGCTCCGCCGCAATATGTCGCTGGACGACGATATCGCAGATGGTGGGTTGGATTGGTTTGCAGCTATGGACGAGGGCGAAGGAGAAAAAGAAGAGGAAGAAAAAGAAGAGGTGATGACGGAGGGATTTGCAAGAAACGGGAAGGGGAGAGTGACTTCGACATCGGTGGCAGAGGCGATGGAGCTGGCAGCTCAAAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGAGTTGGGGGGAGTTTGTGGTGAAGGCAGAGGACGTGGACGTGATGATTAATGGTATTCCTTGGAGAGTTGGGATAAGAGTGAAAATGGGCAGAGAGAACTATGATTCGTCACGGATGGATTGGTTTCAGGGGACTGTTTCTGGTGTTACTGTTCCCGGTAAAGATCAACCATGGAGTGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCCGAAATCTTGAAGAATGTAAATCCTGTCAGTCCATGGCAGGTGGAACTTCTTTCTGAGACACTTTTACTTCCTCAACTATTTCCCCCAACAAAGAGGTTCAGAACTAATGAAATGGGAGAATCCTCCTCTTCCATTACAAGATTTTCTATTCCTGATTCCACAATGGGAGTGCTGAATCAAACATTGTTGAGTAATTATGATACTTTTTTTTCTGCTAGCATGCAGGGAGCCAGGCATCCTCTATTTTCTGCAGCTACTTATCCCCTCTTTCCGATTGATCCTTCTCTGTCTATTGATAGTTCCTTTGAGAATAATATTGTACCAAAGTTAAATGTTATGTTGCCAAAACTTAACATTGACACTCATAAGCCTAAAAACTTATCACCACATAGCAAGTCTAGTTTGACTCCCATTGATGAGACCCCTAACAGCAACTCAACCAAATCTGGAGCTACTTCATTTCAGTTATTTGGTTGTACTATTCAAACAGATCAAGCTTCTGATAAAATTGATGACCATAACAATCTTGAAGGAGAAGACAACATACAATAA 1671 0.4823 MPRRSAPSSSLPPRPTPIPAKFWRACAGISAKAPVVNSRVYYFPQGHIDQAASQPRNLSPLVYSRPVIPCRVAAVNYFADPNTDEVFLKILLVPVTDGSAQDFLPPAVAAEGNSGNGIGDDEEVASYAKILTRSDANNGGGFSVPRSCADLVFPPLNFEEDPPVQNLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSDGRMFVGLRRNMSLDDDIADGGLDWFAAMDEGEGEKEEEEKEEVMTEGFARNGKGRVTSTSVAEAMELAAQNKPFEVVYYPSVSWGEFVVKAEDVDVMINGIPWRVGIRVKMGRENYDSSRMDWFQGTVSGVTVPGKDQPWSGSPWRMLQITWDESEILKNVNPVSPWQVELLSETLLLPQLFPPTKRFRTNEMGESSSSITRFSIPDSTMGVLNQTLLSNYDTFFSASMQGARHPLFSAATYPLFPIDPSLSIDSSFENNIVPKLNVMLPKLNIDTHKPKNLSPHSKSSLTPIDETPNSNSTKSGATSFQLFGCTIQTDQASDKIDDHNNLEGEDNIQ* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0609 556 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Ahy8g0609 556 MobiDBLite consensus disorder prediction 494 522 - -
Ahy8g0609 556 SUPERFAMILY DNA-binding pseudobarrel domain 123 233 IPR015300 -
Ahy8g0609 556 Gene3D - 124 229 IPR015300 -
Ahy8g0609 556 CDD B3_DNA 126 227 IPR003340 GO:0003677
Ahy8g0609 556 Pfam Auxin response factor 282 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy8g0609 556 Gene3D - 321 394 - -
Ahy8g0609 556 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Ahy8g0609 556 PANTHER AUXIN RESPONSE FACTOR 15 546 - -
Ahy8g0609 556 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 546 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy8g0609 556 SMART B3_2 127 229 IPR003340 GO:0003677
Ahy8g0609 556 MobiDBLite consensus disorder prediction 501 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0609 Ahy-Chr8 11881702 11883727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0609 22 553 B3 DNA Binding Superfamily AT1G77850 42.549 5.24e-131 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy8g0609 B3 2.60E-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2894 17 128447665 128449776 Ahy8g0609 8 11881702 11883727 hybridization
Ahy17g2894 17 128447665 128449776 Ahy8g0609 8 11881702 11883727 PCT
Ahy8g0609 8 11881702 11883727 Ahy17g2894 17 128447665 128449776 PCT